Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06359 ATGGGTAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGAGCTTGGTCCAAAGAAGAAGACGAACGCCTCGTCAACTACATCAAGGTCCATGGCGAAGGTTGTTGGAGATCTCTCCCCAAAGCAGCAGGCTTGCTTCGATGTGGCAAGAGTTGCAGATTGAGATGGATAAATTACCTGAGACCTGATCTCAAGAGAGGAAACTTCACTGATGAAGAAGATGATCTCATCATCAACCTCCACGGCGTGCTTGGAAACAAGTGGTCTATAATAGCTTCAAGGCTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAACACTCACATCAAGCGCAAACTCTATAGCCGTGGAATCGATCCGGTAACTCATCAACCACTCAAAGGCGAAGGCGCTGGCGCTGCCGCGGCCGCTGCGGCTCCACCTGCTAATAACGCCGCAGTTCCGCCGCCTGTGGTGACCACAAGCAAGAAGGAAACTAGCAATGAAGAAAGCAGTAGCAGCGTTATCACTAGCAGCAACAACAACCTGAACCTGCAGAGCAGGGAGATTTTTCAGTTATTTGGTGCTCATATGAATTCCTCTAACAAGTTTGTTAATGGAATTGAACAGTCCTCAGTTGGTGAAGATTCGAATAGCAGCAGTGGTGTTACTGTTACTACCACAGAGGAAGCTTATCCTCCAATCAACTTAGAGCTTTCCTTATCCCCACCCTCTCAAGTAGTTTCTTCTACCGTTGAACAGCGAGTTTTCTATCCGTTGCAACAATATGGTGGTGGAAACGCTGTTAGTAGTAGCCAAGGTGCGATGTGCCTGTGTAACCGTCTAGGGTTACGAAGCAACGGTGCTTGTAACTGCAAAGCCGTGGGTTCTGGTCCACCTGCTGCCACCAACAATGATGTGTACAGTTTTTTCGGAGCCAAAAATTTGAATATTTGA 945 0.4709 MGRSPCCEKEHTNKGAWSKEEDERLVNYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDDLIINLHGVLGNKWSIIASRLPGRTDNEIKNYWNTHIKRKLYSRGIDPVTHQPLKGEGAGAAAAAAAPPANNAAVPPPVVTTSKKETSNEESSSSVITSSNNNLNLQSREIFQLFGAHMNSSNKFVNGIEQSSVGEDSNSSSGVTVTTTEEAYPPINLELSLSPPSQVVSSTVEQRVFYPLQQYGGGNAVSSSQGAMCLCNRLGLRSNGACNCKAVGSGPPAATNNDVYSFFGAKNLNI. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06359 314 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca12g06359 314 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca12g06359 314 CDD SANT 69 112 IPR001005 -
Seca12g06359 314 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 206 - -
Seca12g06359 314 CDD SANT 16 61 IPR001005 -
Seca12g06359 314 MobiDBLite consensus disorder prediction 151 175 - -
Seca12g06359 314 Gene3D - 14 66 - -
Seca12g06359 314 MobiDBLite consensus disorder prediction 123 175 - -
Seca12g06359 314 FunFam MYB-related transcription factor 13 66 - -
Seca12g06359 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca12g06359 314 SMART sant 13 63 IPR001005 -
Seca12g06359 314 SMART sant 66 114 IPR001005 -
Seca12g06359 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca12g06359 314 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca12g06359 314 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca12g06359 314 FunFam MYB transcription factor 68 129 - -
Seca12g06359 314 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Seca12g06359 314 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06359 Seca-Chr12 155572788 155573907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06359 1 308 MYB Transcription Factor Family AT4G38620 45.779 2.71e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g06359 Myb_DNA-binding 7.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06359 K09422 - gmx:100808083 301.597