Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06358 ATGGAGAGGAAAACACTCGGATTTTTGTGCTTGCTCCTTCTTATCTTAGCTGCTGGTGAGATTAATTATATTATTCATTCTTTAGATGTGGCGGTTTTGAGAGTGGAGGGGAGAATGTGTGAGTCAAAGAGCCACAGTTTCAAGGGTCCATGTGTGAGTGAGAGCAACTGTGGACATGTCTGCAGGACCGAAGGTTTTCTCGCTGGCAATTGCCGAGGCTTCCGTCGCCGCTGCTTTTGCACCAAGTATTGTTGA 255 0.4667 MERKTLGFLCLLLLILAAGEINYIIHSLDVAVLRVEGRMCESKSHSFKGPCVSESNCGHVCRTEGFLAGNCRGFRRRCFCTKYC. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06358 84 Gene3D - 38 84 IPR036574 -
Seca12g06358 84 PANTHER DEFENSIN-LIKE PROTEIN 1 6 84 - -
Seca12g06358 84 PRINTS Purothionin signature 69 83 IPR008176 GO:0006952
Seca12g06358 84 PRINTS Purothionin signature 39 54 IPR008176 GO:0006952
Seca12g06358 84 SMART gth_4 39 84 IPR003614 GO:0006952
Seca12g06358 84 SUPERFAMILY Scorpion toxin-like 38 84 IPR036574 -
Seca12g06358 84 Pfam Gamma-thionin family 38 84 - -
Seca12g06358 84 CDD Knot1 49 81 IPR003614 GO:0006952
Seca12g06358 84 ProSitePatterns Gamma-thionins family signature. 38 61 IPR008176 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06358 Seca-Chr12 155557074 155557428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06358 11 84 Plant Defensins Gene Families AT2G02100 53.333 2.72e-23 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06358 - - rvl:131336308 93.2041