Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06355 ATGGATAAGTACGAGACCGTGAAGGATTTGGGAGCTGGGAATTTTGGGGTGGCTAGGCTCATGAGGAACAAGGAGACCAAGGAGCTCGTGGCCATGAAATACATCGAGCGTGGCCACAAGATTGATGAGAATGTGGCGAGAGAGATCATCAACCACAGGTCCCTTCGGCATCCCAATATAATTCGCTTCAAGGAGGTGGTTTTGACCCCCACCCATTTAGCAATAGTAATGGAGTATGCAGCTGGAGGAGAACTCTTTGAGAGGATATGCAATGCTGGCAGATTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATATCTGGTGTCCATTACTGTCATGCCATGCAAATATGCCACAGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGCCCTGCACCCCGCTTGAAAATTTGTGACTTCGGTTATTCCAAGTCATCTTTGCTTCATTCACGACCCAAATCAACTGTTGGAACTCCAGCCTATATAGCACCAGAGGTTCTTTCTAGGAGGGAGTATGATGGCAAGTTGGCTGATGTGTGGTCATGTGGAGTGACTCTTTATGTCATGCTGGTGGGAGCATATCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGCAGACACCTTCTTTCTCGTATATTTGTAGCAAATCCATTAAGGAGAATTACTCTTAAGGAAATTAAGAACCACCCGTGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCTGCTCAAGCTATCTATTACCAGAGAGGAGGCAACCCAAGCTTTTCTGTTCAAAGTGTGGATGAGATAATGAAAATAGTGGGAGAAGCAAGAGAACCTCCTCCAATATCTAGGCCTGTGAAAGGTTTTGGCTGGGAAGGGGCTCAAACATTCATTTGTGCAGTATTAGAGGGACGAGTAAGTGGTGAAAGTGTTGTTTTTAATCATCAAGCTATGAATTCTCCAATTCGTGCCCCCTCATCGCCTTCCTCTTCTTCCTGCTCCTGTATTCGTCCTCCTCCATGCCTCACTTATGCTTCTCGCAATTTCAAGTTTCCTATGCTGTTACCACAGGCAATCTGTACCACTCAAAAGATGTATCGTTGCTCTGGAGGCCATGCAGAGGTTTCTACTAACATCAATCCCTTGAAAAACTGCATAGTGGGCAGATGTACTCCAGGATGGTCTGAAGCACAACCCTTTGTGTCCAAGCAATCACACAACAGGCACTTGTTGCCAGTGGAAGCTTTAGTAACTTCAACAGCTCAAGATGTTTCTGATACACCTCTTATCGGTGATGATAAGATTGGAGTGTTACTGTTAAACCTTGGAGGTCCAGAGACTCTAGAAGATGTGCAGCCTTTTTTGTTTAACCTTTTTGCTGATCCAGATATTATACGATTACCAAGGTTATTTAGTTTTCTTCAAAAGCCATTGGCCCAATTTGTATCTGTTTTAAGAGCACCAAAGAGCAAAGAAGGCTATGCTTCAATTGGTGGTGGATCCCCTCTTAGACGCATGACTGATGCACAGGCTGAAGAGTTGAGGAAATCTCTTTGGGCAAAGAATGTCCCAGCTAAAGTGTATGTTGGCATGCGTTATTGGCATCCATTCACTGAAGAGGCTATTGAGCAGATTAAAAGGGATGGAATTACAAAGCTTGTTGTGCTTCCACTTTATCCACAATTTTCAATTTCAACCAGTGGTTCAAGTCTGCGTCTCTTGGAGAGTATATTCAGAGAGGATGAATATCTAGTCAACATGCAGCACACAGTTATACCTTCATGGTACCAACGTGAAGGATACATAAAGGCCATGGCAAATTTAATTGAACAAGAGCTAAAAGGTTTTGACTGCCCTGAAGAGGTCATGATATTCTTTAGTGCACATGGGGTGCCGCTTGCTTATGTGGAAGAAGCTGGTGATCCATACAAGGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAGCTTGAAAGAAGAAAGATAACTAATGCATACACCCTTGCTTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTACACAGATGACACGATAGTTGAACTTGGGAAAAGGGGAGTAAAAAGTTTGCTGGCTGTACCAATTAGCTTTGTCAGTGAACATATTGAAACTCTAGAAGAGATTGATGTTGAGTACAAAGAATTGGCTCTAAAATCTGGTATTGAAAAATGGGGTCGTGTTCCTGCTCTGGGATGTGAACCCACCTTCATTTCAGATTTGGCAGATGCTGTAATTGAGAGTCTCCCATATGTTGGTGCAATGGCAGTTTCAAACCTTGAAGCTAGACAGTCTTTGGTTCCACTAGGCAGTGTAGAAGAGTTATTGGCAGCATATGACTCGCAACGTAGGGAGTTGCCACCACCAGTGCTAGTATGGGAATGGGGATGGACAAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGCTTGCTGTGCTTCTTCTGTTGTTTTTAGAAGTCACCACTGGTGAGGGATTTTTGCACCAGTGGGGAATATTGCCCTTGTTTAGGTGA 2616 0.4331 MDKYETVKDLGAGNFGVARLMRNKETKELVAMKYIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRRITLKEIKNHPWFLKNLPRELTESAQAIYYQRGGNPSFSVQSVDEIMKIVGEAREPPPISRPVKGFGWEGAQTFICAVLEGRVSGESVVFNHQAMNSPIRAPSSPSSSSCSCIRPPPCLTYASRNFKFPMLLPQAICTTQKMYRCSGGHAEVSTNINPLKNCIVGRCTPGWSEAQPFVSKQSHNRHLLPVEALVTSTAQDVSDTPLIGDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRLFSFLQKPLAQFVSVLRAPKSKEGYASIGGGSPLRRMTDAQAEELRKSLWAKNVPAKVYVGMRYWHPFTEEAIEQIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYIKAMANLIEQELKGFDCPEEVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELERRKITNAYTLAYQSRVGPVEWLKPYTDDTIVELGKRGVKSLLAVPISFVSEHIETLEEIDVEYKELALKSGIEKWGRVPALGCEPTFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAAYDSQRRELPPPVLVWEWGWTKSAETWNGRAAMLAVLLLLFLEVTTGEGFLHQWGILPLFR. 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06355 871 SUPERFAMILY Protein kinase-like (PK-like) 1 261 IPR011009 -
Seca12g06355 871 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca12g06355 871 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Seca12g06355 871 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Seca12g06355 871 CDD Ferrochelatase_N 459 621 IPR033659 -
Seca12g06355 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Seca12g06355 871 CDD Ferrochelatase_C 627 765 IPR033644 -
Seca12g06355 871 Hamap Coproporphyrin III ferrochelatase [cpfC]. 457 782 IPR001015 GO:0004325|GO:0006783
Seca12g06355 871 ProSitePatterns Ferrochelatase signature. 648 669 IPR019772 GO:0004325|GO:0006783
Seca12g06355 871 Gene3D - 620 763 - -
Seca12g06355 871 PANTHER FERROCHELATASE 456 808 IPR001015 GO:0004325|GO:0006783
Seca12g06355 871 CDD STKc_SnRK2 3 259 - -
Seca12g06355 871 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Seca12g06355 871 Pfam Ferrochelatase 458 781 IPR001015 GO:0004325|GO:0006783
Seca12g06355 871 Gene3D - 458 781 - -
Seca12g06355 871 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06355 871 SUPERFAMILY Chlorophyll a-b binding protein 826 866 - -
Seca12g06355 871 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06355 871 FunFam Ferrochelatase 458 636 - -
Seca12g06355 871 NCBIfam ferrochelatase 457 782 IPR001015 GO:0004325|GO:0006783
Seca12g06355 871 SUPERFAMILY Chelatase 457 788 - -
Seca12g06355 871 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Seca12g06355 871 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06355 Seca-Chr12 155518611 155534539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06355 3 263 CBL-interacting serine-threonine protein kinases AT2G26980 42.279 9.24e-63 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca12g06355 Ferrochelatase 8.7e-111 CL0043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06355 K01772 - gmx:100803481 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06355 12 155518611 155534539 Seca12g06355 12 155518611 155534539 ECH
Seca12g06355 12 155518611 155534539 Seca4g01850 4 30915357 30921378 PCT