Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06352 ATGGCTTCTTCTATTGTTCGTAGGACCATCACCCACAAACTGAAGCTCCCATTTTCTTGTTCTTGGTGCTTGAATCATCACTTGGTGTCTCGCCATAGCTCAATCCACGCTGTTGAAGATGCCGTTTCCTTTCACAGCCAAGCCGTTGGGGGTGGTGGTGCAGGACTCCCATCTTATATGCGTGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATCGAGGAATTCCACATTCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAAGCTTGTGGAGTATGCCACTCTGATCTGCATGTTTTGAAAGGTGAAATTCCATTTTCTAGTCCTTGCGTTTTGGGGCATGAGATTACTGGCGAAGTTGTTGAACATGGATCACTCTCTGATGGAAAAATCATAGAAAGGCTTCCTGTTGGATCTAGAGTTGTTGGGACCTTCATCATGCCTTGTGGCAACTGCTCATATTGTTCAAAGGGCCATGATGATCTGTGTGAAGCTTTCTTTGCTTATAACCGAGCAAAAGGAACCCTCTATGATGGTGAAACACGACTCTTTCTTCGAGGCAGTGGAAAGCCTGTATTCATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGCATTGACTGTATTACCAGACTCATTGCCATATACCGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTATGGTGCCATGGCTCATGCGGCTGAAGTGCGTCCGGGTGATTCTGTTGCTGTTATTGGAACTGGGGGTGTTGGTTCTAGTTGTTTGCAGATAGCTAGAGCATTTGGTGCTTCCGATATTATTGCTGTCGATGTCCAGGATGAAAAGCTACAGAAAGCGAAGAAATTTGGTGCTACTCACACTATAAATTCAGCAAAGGAGGATCCGATTGAGAAGATAATTGTATATGCATATTTCTCTTTTGCCTCATCATTTAATATCTAG 975 0.4492 MASSIVRRTITHKLKLPFSCSWCLNHHLVSRHSSIHAVEDAVSFHSQAVGGGGAGLPSYMRGAVYWEPNKPLTIEEFHIPRPKAGEVLIKTKACGVCHSDLHVLKGEIPFSSPCVLGHEITGEVVEHGSLSDGKIIERLPVGSRVVGTFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFLRGSGKPVFMYSMGGLAEYCVVPANALTVLPDSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVQDEKLQKAKKFGATHTINSAKEDPIEKIIVYAYFSFASSFNI. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06352 324 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 117 131 IPR002328 GO:0008270|GO:0016491
Seca12g06352 324 FunFam Alcohol dehydrogenase (Zinc) 64 249 - -
Seca12g06352 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 226 310 IPR036291 -
Seca12g06352 324 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 59 310 - -
Seca12g06352 324 SUPERFAMILY GroES-like 55 263 IPR011032 -
Seca12g06352 324 Pfam Zinc-binding dehydrogenase 260 310 IPR013149 -
Seca12g06352 324 Gene3D - 64 236 - -
Seca12g06352 324 Gene3D - 237 310 - -
Seca12g06352 324 Pfam Alcohol dehydrogenase GroES-like domain 85 215 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06352 Seca-Chr12 155498010 155502800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06352 66 295 Monolignol Biosynthesis Gene Families AT2G21730 30.380 4.82e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06352 - - gmx:100802431 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06352 12 155498010 155502800 Seca12g06352 12 155498010 155502800 ECH