Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06351 ATGATTCAATACAGTATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGCTGAAAAATTGCAGGAACGTTTATTTGTGGGTGCTGAACTGTATGGGAAAAAGGATGATGGAGTATGTCCATGCAGAATATTAAAAGTCATCCAAGAAGGGGTTGACAAATTCTGTTATGAGGTAGCTTGGCTTGACAAAAACAAGAACGTAAGTGAAAAAGCAGAACTCGGTGCAGAAGATTTGGTGCAAAAGAAGCCGCTTTTTAGTAGAAATATGCTAAAGTCTTTTATTCGGGAATCTACATATCGAAATGCCCCTTGGGTTTTACATGATGAACTGGCACAAAATCATGGAATCTCAACTGACATTCCTGAGGAGTTAAGAGGAAAGGTGTTTTTCAAGGATGGACTTTTAGTTTGCTCCAAGAAAAGGAAAAATGAGGAATCAATGGAAGAAGATAACTGTAAAAGGAAGAAGTTGGATCAGACACTAGTCAATGGTTCTGCCCAAGAGAAAGAAAATGGTGAACACAAGGAAAAACCAATCAAATATCCTATTGATGATCTATTGGTGAAACCTAGTCCAGATGATCCTGTTTTCACTGATCGCCCTTCTCCATTGAGAGACTTCAATATCCCAATGCATTGTGTTGGGGATCTCTTAATGGTTTGGGATTTGTGTACTTCTTTTGGTAAAGTGTTGCATTTGTGGCCCTACTCTCTAGAAGATTTTGAAAATGCAATCTGCCATAAGGATAGTAATGTGGTTCTCCTTGTGGAATCTCACGCTGCACTTTTTCGGGTTCTCATCAAAGATGATGGTGAATACTCTTCAGCTGTAAAGAAACGAAAGTTGAAGAAGATTACATTGATTAATTGGACAGAATATTTATGCGATTTTCTAGAAATGATCAATATTCCTAGACTACGGAACTATGAAGCCACCATAAAACGGGGACATTATGGCCTTGTTGACGTCAATGCTAAATTAGAAATCTTGTGTGAATTGGTTAATCGAGCCCTTGAAACTGATATTTTCCGGGAAAAGTTGGATGAATTTATTGAACAGAGGCAAGCACTTGGGGCCTCTAGAAGGGAAGAAGCACTGGAAGATGGTAGGAAGAGAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAATCAGAAAGCAATGGCATTGTGGATGGGCATCATCTGGACAGCGAAAATGGCTTAACAAACACTAATCACATCATACAAAATGGAGATGTGGGAAAGAAAAGAAATGGAGAGATAGAATCATCTGTGCAAAACAATCCATTGGATGGAAGTGGGATCAAGCATTCAAATCATGCTTCAAGGAAGACACCCAAAAAGCTGAATTCAGAACTGAAAGAACCAGCTGAAAATGGAAAAGAATTATCCAGAAAGGAATTGCTGAAACAGTCGAAGGGTGATAAGGATTCACCAGAGAAGAATAGTAAAGACCATAGGAAAGAATATTTTGAACGGGAGATGGAGAAACGAATTATTCGTAGAAGCCCATTAGGCAAGGACAGAGATTACAATAGGTATTGGTGGTTCCGTCGTGATGGGAGGATATTCGTTGAAAGCTGTGACTCCAAGGAGTGGGGATACTACAGCAGCAAGGAAGAGCTTGATGCATTGATGGGTTCACTGAATTGCAAGGGTGAGCGGGAAAGGGCTCTGCGAAAACAACTGGAAAAATATTATAGTAGTATATGCTCAGAACTCCAGAAAAGATCGAAGGATTTGATGCATAGTATTGCGAATGATGAGTCTGTGCTTCGAAGGTCTACTCGTGTTCGAGCTCCACCTAGAGAAAACCCTGCCAATGCTTTCCTCAGATATGTGAACAAGTGGAAAGAAGAGTAG 1860 0.4005 MIQYSMLPLKDLADSIAEKLQERLFVGAELYGKKDDGVCPCRILKVIQEGVDKFCYEVAWLDKNKNVSEKAELGAEDLVQKKPLFSRNMLKSFIRESTYRNAPWVLHDELAQNHGISTDIPEELRGKVFFKDGLLVCSKKRKNEESMEEDNCKRKKLDQTLVNGSAQEKENGEHKEKPIKYPIDDLLVKPSPDDPVFTDRPSPLRDFNIPMHCVGDLLMVWDLCTSFGKVLHLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKDDGEYSSAVKKRKLKKITLINWTEYLCDFLEMINIPRLRNYEATIKRGHYGLVDVNAKLEILCELVNRALETDIFREKLDEFIEQRQALGASRREEALEDGRKRREEKERLKAESESNGIVDGHHLDSENGLTNTNHIIQNGDVGKKRNGEIESSVQNNPLDGSGIKHSNHASRKTPKKLNSELKEPAENGKELSRKELLKQSKGDKDSPEKNSKDHRKEYFEREMEKRIIRRSPLGKDRDYNRYWWFRRDGRIFVESCDSKEWGYYSSKEELDALMGSLNCKGERERALRKQLEKYYSSICSELQKRSKDLMHSIANDESVLRRSTRVRAPPRENPANAFLRYVNKWKEE. 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06351 619 MobiDBLite consensus disorder prediction 419 434 - -
Seca12g06351 619 MobiDBLite consensus disorder prediction 361 391 - -
Seca12g06351 619 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 617 - -
Seca12g06351 619 Pfam DDT domain 212 269 IPR018501 -
Seca12g06351 619 MobiDBLite consensus disorder prediction 444 488 - -
Seca12g06351 619 MobiDBLite consensus disorder prediction 361 488 - -
Seca12g06351 619 Coils Coil 362 386 - -
Seca12g06351 619 ProSiteProfiles DDT domain profile. 211 272 IPR018501 -
Seca12g06351 619 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 499 565 IPR028941 -
Seca12g06351 619 ProSiteProfiles WAC domain profile. 1 36 IPR013136 -
Seca12g06351 619 MobiDBLite consensus disorder prediction 396 410 - -
Seca12g06351 619 SMART testlast3 211 272 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06351 Seca-Chr12 155486086 155494988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06351 480 569 Homeobox Transcription Factor Family AT1G28420 37.374 6.88e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca12g06351 WSD 4.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06351 - - gmx:100789956 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06351 12 155486086 155494988 Seca12g06351 12 155486086 155494988 ECH
Seca12g06351 12 155486086 155494988 Seca12g06351 12 155486086 155494988 PCT