Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06338 ATGGCTGCTCCTCCTGTGAACCCTTTACCAGTAGCATACCAAGCATGGACGAGTCTTGCAGTACCGGATTGGTTGAACAAAGGGGACAACTCATGGCAAATGGTAGCAGCTACCCTTGTGGGGATTCAGAGCATGCCAGGGCTAGTCATTCTCTATGGTAGCATTGTAAAAAAGAAATGGGCTGTGAACTCTGCTTTCATGGCTCTGTATGCATTTGCAGCAGTTATCATTTGTTGGGTTACATGGGCTTACAAGATGTCTTTTGGGGAAAAGCTTTTACCTTTTTGGGGTAAAGCTGGGCCCGCTTTGGGGCAGAAGTTTCTCATCAAACAGGCCGGGCTACCCGCCACACCACATTATTATCATAATGGTGATTTGGAGACTGCTGAGATTGAACCCTTTTATCCCATGGCCACTATGGTGTGGTTCCAATGTGTATTTGCTGCCATTGCTCTTGTTATCTTGGCTGGATCTGTGTTGGCTAGGATGAATTTCAAGGCGTGGATGATGTTTGTGCCACTTTGGCTCACTTTTTCTTACACCATTGGGGCTTTTAGTTTGTGGGGTGGTGGCTTCTTGTTCCAATGGGGTGTCATGGACTACTCTGGTGGTTATGTCATTCATCTTTCTTCCGGGATTGCTGGATTCACTGCTGCTCATTGGTTGGGGCCAAGATCGAAGAAGGACAGGGAGAGATTCCCACCAAACAATGTGTTACTAACATTGACAGGAGCAGGGTTACTATGGCTGGGATGGGCTGGTTTCAACGGAGGAGATCCCTACGCCGCTAACACTGACTCCTCCATGGCTGTGCTCAACACCAACGTGTGCGCCGCCACTAGCCTCCTTGTGTGGACATGGCTTGATGTCATTTTCTTCAAGAAACCCTCAGTTATTGGAGCGGTTCAGGGCATGATCACTGGCCTTGTTTGCATCACTCCCGCGGCTGGTCTGGTTCAAGGATGGGCTGCCATAGTGATGGGAGTGCTTTCAGGCAGTGTGCCATGGTACACCATGATGGTACTTGGCAAGAAGTTTTCAGTGTTTCAAAAGGTTGATGACACCCTTGCTGTGTTCCACACTCATGCTGTGGCTGGCCTTCTAGGTGGTGTCCTCACTGGCCTATTTGCTGAACCCCGTTTAAGTGCACTCTTTCTGCCCGTAACAAATTCCCAAGGAGGGGTCTATGGAGGCTCTGGTGGAGTCCAAATCCTTAAACAAATCGTGGGAGGTTTATTCATAGTTGGATGGAACCTTGTGGCTACTTCAATTATTTGTGTGGTTATAAAGTTGATTGTGCCACTGAGAATGACAGAGGAAGAGTTGGTAATTGGGGATGATGCAGTTCATGGGGAAGAAGCTTATGCTCTGTGGGGTGATGGAGAGAAACTTTCCCTCTACAAAGATGATACCACCCGCCATGGAATAATCGCCTCAAGTGGTGCCACTCAAGTGGTCTAA 1461 0.4832 MAAPPVNPLPVAYQAWTSLAVPDWLNKGDNSWQMVAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWAYKMSFGEKLLPFWGKAGPALGQKFLIKQAGLPATPHYYHNGDLETAEIEPFYPMATMVWFQCVFAAIALVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAHWLGPRSKKDRERFPPNNVLLTLTGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNVCAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPAAGLVQGWAAIVMGVLSGSVPWYTMMVLGKKFSVFQKVDDTLAVFHTHAVAGLLGGVLTGLFAEPRLSALFLPVTNSQGGVYGGSGGVQILKQIVGGLFIVGWNLVATSIICVVIKLIVPLRMTEEELVIGDDAVHGEEAYALWGDGEKLSLYKDDTTRHGIIASSGATQVV. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06338 486 PANTHER AMMONIUM TRANSPORTER MEP2 17 464 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca12g06338 486 Gene3D Ammonium transporter AmtB like domains 12 473 IPR029020 -
Seca12g06338 486 FunFam Ammonium transporter 12 458 - -
Seca12g06338 486 Pfam Ammonium Transporter Family 32 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca12g06338 486 NCBIfam ammonium transporter 29 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca12g06338 486 SUPERFAMILY Ammonium transporter 24 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06338 Seca-Chr12 155307745 155316303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06338 137 474 Inorganic Solute Cotransporters AT2G38290 69.822 5.32e-168 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06338 K03320 - gmx:100785993 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06338 12 155307745 155316303 Seca12g06338 12 155307745 155316303 ECH