LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g06338	ATGGCTGCTCCTCCTGTGAACCCTTTACCAGTAGCATACCAAGCATGGACGAGTCTTGCAGTACCGGATTGGTTGAACAAAGGGGACAACTCATGGCAAATGGTAGCAGCTACCCTTGTGGGGATTCAGAGCATGCCAGGGCTAGTCATTCTCTATGGTAGCATTGTAAAAAAGAAATGGGCTGTGAACTCTGCTTTCATGGCTCTGTATGCATTTGCAGCAGTTATCATTTGTTGGGTTACATGGGCTTACAAGATGTCTTTTGGGGAAAAGCTTTTACCTTTTTGGGGTAAAGCTGGGCCCGCTTTGGGGCAGAAGTTTCTCATCAAACAGGCCGGGCTACCCGCCACACCACATTATTATCATAATGGTGATTTGGAGACTGCTGAGATTGAACCCTTTTATCCCATGGCCACTATGGTGTGGTTCCAATGTGTATTTGCTGCCATTGCTCTTGTTATCTTGGCTGGATCTGTGTTGGCTAGGATGAATTTCAAGGCGTGGATGATGTTTGTGCCACTTTGGCTCACTTTTTCTTACACCATTGGGGCTTTTAGTTTGTGGGGTGGTGGCTTCTTGTTCCAATGGGGTGTCATGGACTACTCTGGTGGTTATGTCATTCATCTTTCTTCCGGGATTGCTGGATTCACTGCTGCTCATTGGTTGGGGCCAAGATCGAAGAAGGACAGGGAGAGATTCCCACCAAACAATGTGTTACTAACATTGACAGGAGCAGGGTTACTATGGCTGGGATGGGCTGGTTTCAACGGAGGAGATCCCTACGCCGCTAACACTGACTCCTCCATGGCTGTGCTCAACACCAACGTGTGCGCCGCCACTAGCCTCCTTGTGTGGACATGGCTTGATGTCATTTTCTTCAAGAAACCCTCAGTTATTGGAGCGGTTCAGGGCATGATCACTGGCCTTGTTTGCATCACTCCCGCGGCTGGTCTGGTTCAAGGATGGGCTGCCATAGTGATGGGAGTGCTTTCAGGCAGTGTGCCATGGTACACCATGATGGTACTTGGCAAGAAGTTTTCAGTGTTTCAAAAGGTTGATGACACCCTTGCTGTGTTCCACACTCATGCTGTGGCTGGCCTTCTAGGTGGTGTCCTCACTGGCCTATTTGCTGAACCCCGTTTAAGTGCACTCTTTCTGCCCGTAACAAATTCCCAAGGAGGGGTCTATGGAGGCTCTGGTGGAGTCCAAATCCTTAAACAAATCGTGGGAGGTTTATTCATAGTTGGATGGAACCTTGTGGCTACTTCAATTATTTGTGTGGTTATAAAGTTGATTGTGCCACTGAGAATGACAGAGGAAGAGTTGGTAATTGGGGATGATGCAGTTCATGGGGAAGAAGCTTATGCTCTGTGGGGTGATGGAGAGAAACTTTCCCTCTACAAAGATGATACCACCCGCCATGGAATAATCGCCTCAAGTGGTGCCACTCAAGTGGTCTAA	1461	0.4832	MAAPPVNPLPVAYQAWTSLAVPDWLNKGDNSWQMVAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWAYKMSFGEKLLPFWGKAGPALGQKFLIKQAGLPATPHYYHNGDLETAEIEPFYPMATMVWFQCVFAAIALVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAHWLGPRSKKDRERFPPNNVLLTLTGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNVCAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPAAGLVQGWAAIVMGVLSGSVPWYTMMVLGKKFSVFQKVDDTLAVFHTHAVAGLLGGVLTGLFAEPRLSALFLPVTNSQGGVYGGSGGVQILKQIVGGLFIVGWNLVATSIICVVIKLIVPLRMTEEELVIGDDAVHGEEAYALWGDGEKLSLYKDDTTRHGIIASSGATQVV.	487

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca12g06338	486	PANTHER	AMMONIUM TRANSPORTER MEP2	17	464	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
Seca12g06338	486	Gene3D	Ammonium transporter AmtB like domains	12	473	IPR029020	-
Seca12g06338	486	FunFam	Ammonium transporter	12	458	-	-
Seca12g06338	486	Pfam	Ammonium Transporter Family	32	455	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
Seca12g06338	486	NCBIfam	ammonium transporter	29	455	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
Seca12g06338	486	SUPERFAMILY	Ammonium transporter	24	437	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g06338	Seca-Chr12	155307745	155316303	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g06338	137	474	Inorganic Solute Cotransporters	AT2G38290	69.822	5.32e-168	476

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g06338	K03320		-	gmx:100785993	894.804

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca12g06338	12	155307745	155316303	Seca12g06338	12	155307745	155316303	ECH

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