Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06336 ATGGTTATTTTTTGCATTACTACTTTCAGCTTTTCAGATAATCACCTTCAATGTGATGCTAGCTTTGATCAGCCTTGTGTTTCTAAATCTGAACATCCAGCTTCAACCAAGAAATCAAAACTAGCAAAAGTTGTACGTTTTGCAAGTTGTGGTGCATTTGCAATTCTCTGTCTTGGGGCTATCTTTACATATAGATACCACCAAACACGCAGACACAAAAGTGACATCTTTGTTGATGTTTCAGGTGAAGATGAGAGCAAAATTTCTTTTGGCCAATTGAGGAGATTTTCTTGGCGTGAAGTCCAACTTGCTACTAAAAATTTCAGTGAAAGCAATGTAATTGGCCAGGGTGGTTTTGGAAAAGTGTACAAAGGAGTACTCTCAGATAACACAAAAGTTGCTGTGAAACGCCTCACTGATTATCATAATCCTGGTGGAGAAGCTGCATTTGAGAGAGAAGTTCTACTTATAAGTGTTGCAGTTCATAGAAACCTCCTAAGGCTAATTGGGTTCTGTACAACCTCAACTGAAAGAATCCTTGTATACCCTTTCATGGAAAATCTAAGTGTAGCATATCGATTGAGAGATTTAAAACCTGATGAGAAAGGGTTGGATTGGCCAACAAGGAAACGTGTGGCTTTTGGTACAGCACAAGGTTTGGAGTATCTACATGAGCAATGCAATCCAAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTACTAGATGATGAGTTTGAAGCTGTTCTAGGTGATTTTGGGCTAGCCAAGCTGGTTGATGCAAGGATGACTCATGTTACCACTCAAGTGAGGGGTACAATGGGTCATATTGCCCCAGAATATTTGTCCACTGGAAAATCATCAGAGAAGACAGATGTTTTTGGATATGGCATAACACTTCTTGAACTAGTCACTGGACAGCGTGCAATAGACCTCTCTAGGCTTGAAGAGGATGAGGATGTTCTTCTAATTGATCATGTTAAGAAGCTACTGAGAGAAAATAGGCTGGAGGATATAGTGGATAGAAATTTGGAGAGTTATGATCCCAAAGAAGTTGAGACCATTCTTCAGGTTGCATTACTTTGCACACAAGGCTTTCCTGAGGATCGTCCAACCATGTCAGAGGTAGTGAAAATGCTGCAGGGTGTGGGATTGGCAGATAGATGGGCTGATTGGAAACAACTTGAAGAGGCTAGGAATCAAGAGTTCTCACTCATGACTCACCAATTTGTTTGGAGTGATGAATCTACTCTTGATCAAGAAGCTATACAGCTTTCCAAAGCAAGATAG 1293 0.4029 MVIFCITTFSFSDNHLQCDASFDQPCVSKSEHPASTKKSKLAKVVRFASCGAFAILCLGAIFTYRYHQTRRHKSDIFVDVSGEDESKISFGQLRRFSWREVQLATKNFSESNVIGQGGFGKVYKGVLSDNTKVAVKRLTDYHNPGGEAAFEREVLLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKPDEKGLDWPTRKRVAFGTAQGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDLSRLEEDEDVLLIDHVKKLLRENRLEDIVDRNLESYDPKEVETILQVALLCTQGFPEDRPTMSEVVKMLQGVGLADRWADWKQLEEARNQEFSLMTHQFVWSDESTLDQEAIQLSKAR. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06336 430 Pfam Protein kinase domain 109 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06336 430 FunFam Somatic embryogenesis receptor kinase 1 77 184 - -
Seca12g06336 430 ProSitePatterns Protein kinases ATP-binding region signature. 114 136 IPR017441 GO:0005524
Seca12g06336 430 SMART serkin_6 108 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06336 430 FunFam Somatic embryogenesis receptor-like kinase 1 185 401 - -
Seca12g06336 430 Gene3D Phosphorylase Kinase; domain 1 77 184 - -
Seca12g06336 430 Gene3D Transferase(Phosphotransferase) domain 1 185 401 - -
Seca12g06336 430 SUPERFAMILY Protein kinase-like (PK-like) 86 382 IPR011009 -
Seca12g06336 430 ProSiteProfiles Protein kinase domain profile. 108 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06336 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Seca12g06336 430 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 83 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06336 Seca-Chr12 155299406 155301882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06336 3 430 Receptor kinase-like Gene Family AT5G10290 63.426 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca12g06336 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06336 - - gmx:100800886 781.556