Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06321 ATGGGCAAAGAAAATGTGTCACCAATGGCAAAGGAAGAAGTCAGTGATGATGGTTCCTCAAGCGTTGAGACTGGGGACTTAGAATCTCATCCTCGACTTAGTCTGGAGAAGGAGACAGGCTTGGCAAGTTGTCGTGTGTGCCAGTGTGCTGAGTCTGATAAAAGGGGAGATGCTGCACTAGAATTTTTGGGCATCACTCCTGTTATAGAGTCTGATGGCAAGGGGGTTCAAAAAGATATGTCTCTTCATAAAAATATTGAAAACAAATCTGGGGTGGTGGAATTTGTAGGCCCTGATGGGGAGGTTTTCATTTGTAAAAATGATTTGGAAATTGGTTTGTCTCATCAAGATGCATTGCTTGAACTTGGTTGTTGTTGTAAAAATGACCTTGCTTTAGTGCATTATGCTTGTGCACTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGACATATAGCGAATAATATCAGAGTATCTGACTTCAATAAGGTCGTTGGTTCTTTGAAGGAGTATGAAGCATTGAGGGAAAGAACTGCCACTGGGGATCCTGGTCCTGCTCAAGCTAATGCAAATAATGGGGTGGATCCTGATGCTGTGGCTGCTATCCGGAGGCAACGACTAAGTGAAATAGCACTATGGTTTTGTCCTCATAATAGCAGTAACATTACCAACAATAGCAATGTGGATACAGTTTCACTGGTTGTCTCTGAGCAGCCTTTGAATATTGTTCCTGAAGATGCTGGCCCTGAACAGAATCCTGCAACTAAATGGGCAGTAGAAGGTACTGGGATCCTGCTAGCTACAGGCCTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGAAAGAAAACTGCAAAAAGTGGTCTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTGGTTTTCTTCCGCTTTTTTGTGCTCACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCACGGACGCACGGTGCCCATACAACGTGA 1059 0.4372 MGKENVSPMAKEEVSDDGSSSVETGDLESHPRLSLEKETGLASCRVCQCAESDKRGDAALEFLGITPVIESDGKGVQKDMSLHKNIENKSGVVEFVGPDGEVFICKNDLEIGLSHQDALLELGCCCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRVSDFNKVVGSLKEYEALRERTATGDPGPAQANANNGVDPDAVAAIRRQRLSEIALWFCPHNSSNITNNSNVDTVSLVVSEQPLNIVPEDAGPEQNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06321 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 156 IPR013083 -
Seca12g06321 352 PANTHER ZINC FINGER, RING-CH-TYPE 15 319 - -
Seca12g06321 352 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Seca12g06321 352 SMART ringv_2 104 154 IPR011016 GO:0008270
Seca12g06321 352 Pfam RING-variant domain 117 153 IPR011016 GO:0008270
Seca12g06321 352 MobiDBLite consensus disorder prediction 1 34 - -
Seca12g06321 352 SUPERFAMILY RING/U-box 115 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06321 Seca-Chr12 155109020 155113650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06321 1 342 C3H Transcription Factor Family AT5G08750 65.439 8.07e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06321 - - gmx:100805323 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06321 12 155109020 155113650 Seca12g06321 12 155109020 155113650 ECH