Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06318 ATGCAAGGTGCATTGGAGTTACCACCTGGCTTCAGATTTCACCCCACCGATGATGAGTTGGTGAATCACTACTTGTGTAGGAAGTGTGCTTCCCAGTCAATCGCTGTTTCTATTATCAAAGAACTCGACTTGTACAAGTTTGATCCATGGCAACTTCCAGAAATGGCTCTTTATGGTGAGAAAGAATGGTACTTTTTCTCGCCAAGGGACCGAAAATATCCAAACGGTTCAAGACCGAACCGGGCGGCCGGAACCGGATATTGGAAGGCCACGGGAGCGGATAAACCGATCGGAAAACCGAAGCCACTTGGGATTAAGAAGGCACTTGTGTTCTATGCAGGGAAAGCCCCTAAAGGAGTGAAAACCAATTGGATTATGCATGAGTATCGTCTTGCCAACGTTGATAGATCTGCCTCTAAGAAAAACAATAACTTAAGGGGTGAATGGCAGCTTGATGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAAATTGAGAAATACAACAGTGTGGGGATGGTGGATCAGAAAGCAGTAGCCAAGTTTTCTGAGGAATTTCACGAGACTAAGCCTGAGATCAAGATGTACGGCCAGGATGATTTCAGGAATGACCAATTGTATATGGACACGTCAGATTCGGTGCCTAGGTTGCACACGGACTCAAGCTGTTCGGAGCACGTGGTTTCACCGGATGTCACGTGCGAGAAGGAGGTGCAAAGCGAGCCCAAGTGGAATGAACTTGAGTTCGGCCCAGACCCAGTTGCAGGAGGAGGAGGAGGAGCCTTTGATTTTCAGTTGAATTTTATGGACAATAGTAACATGAACATGGCAGGTGGAGATGACCCTTTTGCCCCTCAGTTCCAAATGAACCAGTTATCGTCGTCTTGGCAAGATATGTTCATGTATCTACCCAAGTCATTTTGA 927 0.4628 MQGALELPPGFRFHPTDDELVNHYLCRKCASQSIAVSIIKELDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKPLGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNLRGEWQLDDWVLCRIYNKKGKIEKYNSVGMVDQKAVAKFSEEFHETKPEIKMYGQDDFRNDQLYMDTSDSVPRLHTDSSCSEHVVSPDVTCEKEVQSEPKWNELEFGPDPVAGGGGGAFDFQLNFMDNSNMNMAGGDDPFAPQFQMNQLSSSWQDMFMYLPKSF. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06318 308 ProSiteProfiles NAC domain profile. 7 162 IPR003441 GO:0003677|GO:0006355
Seca12g06318 308 PANTHER NAC TRANSCRIPTION FACTOR 56 7 210 - -
Seca12g06318 308 SUPERFAMILY NAC domain 3 162 IPR036093 GO:0003677|GO:0006355
Seca12g06318 308 FunFam NAC transcription factor 16 166 - -
Seca12g06318 308 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Seca12g06318 308 Gene3D NAC domain 16 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06318 Seca-Chr12 155092548 155094154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06318 1 308 NAC Transcription Factor Family AT1G01720 61.218 3.96e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g06318 NAM 4.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06318 - - gmx:100170751 481.1