Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06308 ATGGCGAACAAGAAACCACTCAGTCTCAACGACAGCCACTATCGCTTCCTCCAAGACCTTTCCGCTCCTCCCAAACCCAAACCCTCCGCTACTACAGATAACCCTATCCAACGCCGAAGCACCCAACCACAACACGACGAAACTATTCCCCAATTTTCTGCAATCACTGACTTCGATTCTCCGATCAGTATTGGGCAAAACTCGGCGGAGAAACACGAACCAATCAAGTCAGAAGAAGAAGAAGCTCCACCCAAGGAAATTCCCCTGCCTTCGGCTAATTCTTCCCCGAAGGAGGAAAAAAAGACGAAGGTGAAAGTGCAAGGGCGACGACGCCTCTGCAAGGTTGCGTATGGAGACGCCGGCAAAAATGTGGCCGTTGATGAGCCCAATTTTGATGATATCATCGAACTTGATGATTCGCCCCTTCCGGCACCGAAAAGTGTGATCCAGATCGAGGAGAGCGGGGGTAGGAGTGAAATTAGGGATATTTTGAATGAACTTAGCTCAAAGTTCGAGTTGCTATCAGTTGAGAGGAAGAGGGTGCCGAAGCCTGTTGAGGGTTCGGTTGGAGGGAAAGAAACTTGTGAAGATGAGGCTTTAGAGTTTGGGAGTGCTGGGTCTTCATTTTCTCCACAACAGGATCCCTGTGACAGCTCGTCAGAGGGTACTAAGAAGGGTGGTGATGGTGGTGGTGGTATTGAGTATGATTCGGATGATTCCGTTCAAGAGGTGGATCATTTTGAGCTTAAAAATGATGGTTCTATAACTTTGAGTGGCCCAAAATCTACATTTAAGTTGCCGGGTAAGATTGGAAAAATGTTGTATCCACATCAGCGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTCTCTGGGTAAAGGTGGAATCTTGGGTGATGACATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTCTGGCTGGACTGTTTCATTCCCGTTTAATTAGAAGGGCGTTGGTTGTGGCTCCAAAAACCTTATTACCCCATTGGATAAAAGAACTATCAGTTGTTGGTCTCTCTGAGAAGACAAGAGAATATTTTGCAACTTCTACAAAAGTAAGAGAATATGAACTTCAGTACATACTTCAGGACAAGGGTGTTCTTCTCACAACTTATGATATTGTACGCAACAATTCCAAGTCCTTACGGGGGAATAATTATTTTGACCATGAGGAAAGTGAGGATGGCATTACATGGGACTACATGATACTAGATGAGGGGCACCTTATAAAGAACCCAAGCACACAGAGAGCTAAAAGTTTGCTTGAGATACCCTGTGCTCACCGCATCGTCATTAGTGGCACGCCATTGCAAAATAATCTCAAGGAGTTGTGGGCATTGTTCAATTTCAGCTGCCCTGAGTTGCTTGGTGACAAGAAATGGTTCAAAGAAAAATTTGAATCACCTATACTTCGTGGAAATGACAAAAATGCTTCTGACAGAGAGAAGCGTATTGGTTCCTCTGTAGCAAAGGAGCTAAGAGATCGTATTCAGCCTTACTTTTTGAGACGCTTAAAGAGTGAGGTTTTCAATCAAGCTGATGACAAAACAACAGCAAAACTTTCTCAGAAACAAGAAATCATTGTGTGGCTTCGATTGACCAGTATTCAGCGACATCTTTATGAAGCATTTTTGAGGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCACTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTAACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCAATGCTACAGCCAGATGAAGTTAATGTTGCAGAAAAATTGGCGATGCACATAGCAGATGTTGAAGACACAGACAAGTTTAAAGATGAACATGATGTGTCATGCAAGATTTCCTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAGTGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGTCGAACAGTCAAACATTTGTTCAACTGTTTCTTGAATGCCTAGCGTCCAAAGGTTATGACTTCTTACGAATTGATGGCACAACAAAAGCCAGTGACAGATTAAAGATTGTTAATGATTTCCAAGAAGGTGTTGGTGCTTCTATATTTCTCTTGACATCTCAGGTCGGTGGTTTAGGACTGACACTAACAAGAGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGTGCTTATCGTATTGGTCAAAAGAAAGATGTTCTTGTGTATAGACTGATGACATGCGGAACTGTTGAGGAAAAGATCTACAGGAAACAGGTATATAAAGGAGGATTATTCAAAACAGCTACTGAACATAAAGAACAAATTCGGTACTTTAGCCAGCAGGATCTAAAGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAACGGCAATTGGATGAGGAGCATGATCGTCAACATACAGTGGATGACACTTTCAAAGCACATATAGAGTTCCTGAAAAGGCAGGGTATAGCTGGAGTTAGTCACCACAGTTTACTGTTTTCCAAGACAGACACAGTTCAAGCTGCTCCTGAGGATGATGAAGTAACAAGGAATGCCAGGACTAAATATATTGGAACTTCAAGATCATCTTCACATGAGCATATTGCTGATGGAGTTGATTTTGCTTTTAATCCTAAGGATGTCAACTTGAGCAAAAAAGGTTCTTCTCCAAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAATCGGCTTTCTCAAACACTCTCAAATGCGGCGATGGTTTCTAAATTACCTGACAAGGGGGAGAAACTACAGAAACGAATGGCGGAGCTGAATTTAGAGCTCGCTAAATTGAGGATGGAACAAAGAAATGTAGCTGATTTGGATGATTTTACTAGTGAATTTCAAAGAGTGTTGAATGTATAG 2976 0.4244 MANKKPLSLNDSHYRFLQDLSAPPKPKPSATTDNPIQRRSTQPQHDETIPQFSAITDFDSPISIGQNSAEKHEPIKSEEEEAPPKEIPLPSANSSPKEEKKTKVKVQGRRRLCKVAYGDAGKNVAVDEPNFDDIIELDDSPLPAPKSVIQIEESGGRSEIRDILNELSSKFELLSVERKRVPKPVEGSVGGKETCEDEALEFGSAGSSFSPQQDPCDSSSEGTKKGGDGGGGIEYDSDDSVQEVDHFELKNDGSITLSGPKSTFKLPGKIGKMLYPHQRDGLKWLWSLHSLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSVVGLSEKTREYFATSTKVREYELQYILQDKGVLLTTYDIVRNNSKSLRGNNYFDHEESEDGITWDYMILDEGHLIKNPSTQRAKSLLEIPCAHRIVISGTPLQNNLKELWALFNFSCPELLGDKKWFKEKFESPILRGNDKNASDREKRIGSSVAKELRDRIQPYFLRRLKSEVFNQADDKTTAKLSQKQEIIVWLRLTSIQRHLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLQPDEVNVAEKLAMHIADVEDTDKFKDEHDVSCKISFIMSLLDNLIPEGHSVLIFSQTRKMLNLIQSNSQTFVQLFLECLASKGYDFLRIDGTTKASDRLKIVNDFQEGVGASIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLKELFSLPKEGFDVSVTQRQLDEEHDRQHTVDDTFKAHIEFLKRQGIAGVSHHSLLFSKTDTVQAAPEDDEVTRNARTKYIGTSRSSSHEHIADGVDFAFNPKDVNLSKKGSSPSSAGKLTESEIKDKINRLSQTLSNAAMVSKLPDKGEKLQKRMAELNLELAKLRMEQRNVADLDDFTSEFQRVLNV. 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06308 991 Gene3D - 534 841 IPR027417 -
Seca12g06308 991 Pfam Helicase conserved C-terminal domain 631 754 IPR001650 -
Seca12g06308 991 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 634 804 IPR001650 -
Seca12g06308 991 MobiDBLite consensus disorder prediction 203 237 - -
Seca12g06308 991 PANTHER SNF2/RAD54 FAMILY MEMBER 69 970 - -
Seca12g06308 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 511 IPR027417 -
Seca12g06308 991 MobiDBLite consensus disorder prediction 1 105 - -
Seca12g06308 991 SMART ultradead3 269 472 IPR014001 -
Seca12g06308 991 MobiDBLite consensus disorder prediction 25 67 - -
Seca12g06308 991 Pfam SNF2-related domain 291 581 IPR000330 GO:0005524|GO:0140658
Seca12g06308 991 Coils Coil 951 978 - -
Seca12g06308 991 SMART helicmild6 671 754 IPR001650 -
Seca12g06308 991 MobiDBLite consensus disorder prediction 71 85 - -
Seca12g06308 991 MobiDBLite consensus disorder prediction 205 220 - -
Seca12g06308 991 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 461 IPR014001 -
Seca12g06308 991 FunFam Protein CHROMATIN REMODELING 24 253 531 - -
Seca12g06308 991 Gene3D - 256 533 IPR038718 -
Seca12g06308 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 527 835 IPR027417 -
Seca12g06308 991 CDD SF2_C_SNF 623 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06308 Seca-Chr12 154985512 154993284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06308 291 808 RAD5 or RAD16-like Gene Family AT5G22750 24.649 3.76e-38 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca12g06308 SNF2_N 4.6e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06308 K20093 - gmx:100779283 1525.38