Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06302 ATGGAAGAGGAGAGTCATAGCAATTTGCCAAATGGGTTCAACACAGGAAGCCCTGAAAGTCCTTGCTTAAAGAACAACACCAACACCACACAGAACAACAATAAAGAACAGGATCGGTTTCTCCCTATAGCCAATGTGGGTAGAATCATGAAAAAAGTGATTCCTGCCAATGGAAAAATATCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATCAGTTTTGTGACAGGGGAAGCATCTGACAAATGTCAAAGAGAAAAGAGAAAGACCATCAATGGGGATGATATCATTTGGGCCATCACAACCTTAGGCTTTGAGGATTATGTGGAACCATTAAAATCTTACCTTCAAAAATATAGAGATATAGAAGGAGAGAAGGTTAATGTTCCAAAGCAACAACGCTCTGAACAAAGGCTACATCACCACCATCATAACCAAGATGAAAATAATCAAACATTCAACAATGTATATACCTCAACAAATCTCATATCTCAGCCTCCCTGTGTGGCCACAGATCAGCCATATCCATTACCGTTTTCCCCAAATTCAATTCAAAAACAGTTACGACCGCAAGACCAGATTGATTCAGTGGGGCATTGGTACGAGTAA 621 0.3977 MEEESHSNLPNGFNTGSPESPCLKNNTNTTQNNNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKVNVPKQQRSEQRLHHHHHNQDENNQTFNNVYTSTNLISQPPCVATDQPYPLPFSPNSIQKQLRPQDQIDSVGHWYE. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06302 206 MobiDBLite consensus disorder prediction 1 37 - -
Seca12g06302 206 MobiDBLite consensus disorder prediction 7 37 - -
Seca12g06302 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
Seca12g06302 206 MobiDBLite consensus disorder prediction 134 156 - -
Seca12g06302 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca12g06302 206 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Seca12g06302 206 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Seca12g06302 206 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Seca12g06302 206 Gene3D Histone, subunit A 27 163 IPR009072 GO:0046982
Seca12g06302 206 MobiDBLite consensus disorder prediction 177 206 - -
Seca12g06302 206 ProSitePatterns NF-YB/HAP3 subunit signature. 71 87 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca12g06302 206 MobiDBLite consensus disorder prediction 180 196 - -
Seca12g06302 206 SUPERFAMILY Histone-fold 37 153 IPR009072 GO:0046982
Seca12g06302 206 FunFam Nuclear transcription factor Y subunit B-3 29 155 - -
Seca12g06302 206 MobiDBLite consensus disorder prediction 134 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06302 Seca-Chr12 154919507 154920127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06302 14 204 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.686 1.12e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca12g06302 CBFD_NFYB_HMF 2.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06302 K08065 - gmx:100780647 331.643