Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06297 ATGAAGATGCAAGGCTGTGAGGTTGAGGCCATTGGCATCAACTACAAGATCTACACACAAAAAACGGATCACCCTTTTAAAATCTTCAGCAAATCTCCACAACTAGATACTGAACCAGAAGAGGAAGCAAAAGCTGAAAAAAGTTGCAGTGGAGTTAGGCATGTCCTCAAGAATGTGAGTTGCCAAGCCAAGCCATGGGAGATTCTAGCAATTGTTGGGCCAAGTGGAGCTGGAAAATCATCATTGCTTGAGATCCTAGCTGGTAAACACAGTCCACAAAGTGGTTCTGTGATGGTGAACAAGAAGCCTGTGGACAAAGCTCAGTTCAGAAAGTTTTCAGGGTATGTTACACAAAAGGATACTTTGTTTCCCTTACTTACAGTTGAAGAAACCATGATGTTTAGTGCAAAGCTAAGGCTAAAGCTTCCTCAAGACCAACTATGTTCCAGGGTCAAGTCACTGATTCATGAGCTTGGACTTGACCATGTTGCTGGCACTAGAATTGGTGATGAAAGGGTCCGAGGTATATCTGGTGGAGAGAGGCGCAGAGTTTCTATTGGTGTTGAAGTCATACATGATCCAAAAGTGCTGATTCTTGATGAACCAACTTCAGGGCTTGACAGTACCTCTGCTTTGCAAATAATTGACATGCTTAAGGTCATGACTGACACTAGGGGCAGAACTATAATACTCAGTATCCATCAACCTGGGTTCAGAATTGTGAAGCTGTTCAGTTCTTTGTTGTTGTTAGCTAATGGTTCTGTGTTACACCATGGCACTGCAGATTTGCTTGGTGTGAATCTACGATTAATGGGTCTAGAGCTTCCCCTTCATGTTAATGTAGTTGAATTTGCCATTGACTCCATTGATGTCATTCAGCAGCAAGAAAAGTGTCAGCTAGTTCAGCTAGAAACGCCAATGCAATTGCCAGGGACAATGCAACAGAAGAAAGGTGATGATGAACCAGGTGGTGAGAGTAAAAGTGGTAAGTTTACTCTGCAACAGCTCTTTCAACAATCCAAGGTAATTGATGAGGAAAGCATTAATGCTGGAATTGATTTCTCTTGTGATTTTGCTAATTCTAGATTGAGAGAAACTATGATTCTCACTCATAGGTTCTCCAAAAACATCTTTCGTACAAAAGAGCTCTTTGCATGTAGGACAATTCAGATGCTGATATCTGGGCTCGTTTTGGGGTCTATCTTTTGTAACCTCAAGGATGGTTTAGAGGGAGCAGAAGAAAGGGTGGGTTTATTTGCTTTTATATTAACATTTTTGTTATCAAGCAGCATAGAAGCTCTACCAATTTTTCTGCAAGAAAGGGAGATTCTAATGAAGGAGACATCTTGTGGAAGCTACCGTGTGTCATCCTATGCCATTGCCAATGGCCTAGTTTATTTGCCATTTCTTCTCATCTTGGCCATTTTGTTCACAATGCCCTTATACTGGCTTGTTGGGCTCAACCGGAATTTCATGGCATTTTTGCACTTTTTGTTGCTGATATGGCTGATTCTTTATACTGCCAATTCAGTTGTGGTGTGTTTCAGTGCTCTAGTTCCTAACTTCATTGTTGGAAATTCAGTGATTGCTGGTGTTATCGGGTCTTTCTTCTTGTTCTCTGGATACTTCATATCAAGGAATGAAATTCCAAATTACTGGATTTTCATGCATTATATATCTCTGTTTAAGTATCCCTTTGAAGGGTTCCTGATCAATGAGTTCTCCAACTCAGGGAAGTGCTTTGATTACATGTTTGGGGGATGTGTGATGAGAGGAGAGGATGTGCTTAAAGAAGAAGGTTATGGAGGAGAGAATAGCAGATGGAAGAATGTTGGGGTCACAGTGTGCTTCATCTTGGTTTACAGGTTCATTTCTTATGTTATTCTTAGATACAGATGCTCACAGAGGGGGTTCAGCAGTGTTGTCATCATCTAA 1935 0.4114 MKMQGCEVEAIGINYKIYTQKTDHPFKIFSKSPQLDTEPEEEAKAEKSCSGVRHVLKNVSCQAKPWEILAIVGPSGAGKSSLLEILAGKHSPQSGSVMVNKKPVDKAQFRKFSGYVTQKDTLFPLLTVEETMMFSAKLRLKLPQDQLCSRVKSLIHELGLDHVAGTRIGDERVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMTDTRGRTIILSIHQPGFRIVKLFSSLLLLANGSVLHHGTADLLGVNLRLMGLELPLHVNVVEFAIDSIDVIQQQEKCQLVQLETPMQLPGTMQQKKGDDEPGGESKSGKFTLQQLFQQSKVIDEESINAGIDFSCDFANSRLRETMILTHRFSKNIFRTKELFACRTIQMLISGLVLGSIFCNLKDGLEGAEERVGLFAFILTFLLSSSIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFTMPLYWLVGLNRNFMAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIAGVIGSFFLFSGYFISRNEIPNYWIFMHYISLFKYPFEGFLINEFSNSGKCFDYMFGGCVMRGEDVLKEEGYGGENSRWKNVGVTVCFILVYRFISYVILRYRCSQRGFSSVVII. 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06297 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 262 IPR027417 -
Seca12g06297 644 ProSitePatterns ABC transporters family signature. 176 190 IPR017871 GO:0005524|GO:0016887
Seca12g06297 644 Pfam ABC transporter 56 204 IPR003439 GO:0005524
Seca12g06297 644 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 624 - -
Seca12g06297 644 Gene3D - 43 285 IPR027417 -
Seca12g06297 644 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 277 IPR003439 GO:0005524
Seca12g06297 644 SMART AAA_5 65 254 IPR003593 GO:0016887
Seca12g06297 644 FunFam ABC transporter G family member 5 41 301 - -
Seca12g06297 644 Pfam ABC-2 type transporter 366 574 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06297 Seca-Chr12 154863706 154866935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06297 54 296 Calmodulin-binding Proteins AT2G36910 24.603 1.17e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06297 K05681 - gmx:100789722 1113.6