Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06294 ATGGGGAGTGGAAACATGAACCTTCCTCCTGGGTTTTACTTCTCTCCTACAGATGAAGAACTTGTCCTTCACTTTCTCTATTCCAAGGCTTCTTTACCATGCCATCCCAACATTATACCTGATCTTGACTTGTCTCTGCTTGATCCTTGGGAATTCAATGGTAAAGCTTTGTCAAGTGGAAATCAACACTATTTCTTCACTGAAAAGAAGGGAAACAGATCCACAGAAAATGGATATTGGAAGGAAATAGGAGTCACCAATTCAATATTCTCATCAGATGCTGACAATAAAGTTGGAATCAAGAAGTACCTAGTGTTCAACCTTGGGAAAGCTCCACAAGGGACTGAAACCAATTGGGTAATGGAAGAATATCATATTTGCTCATCTGGGTTTAACACTGCTTCTTGTGGAAGTACTAGGAGAAGAAGAAATTCTGATCAAAGTTGGAGCAAATGGGTTTTATGCAGAGTATATGAAAAGAGGTCACAATCCCAACAAGGTGCAAAGTGGTATAGCGATGAGGATGACAGTGGAACAGAGGTTTCATGGCTAGATGAAGTTTTTATGTCATTAGATGATGATCTTGAAGAAATAAGTCTGCCCAATTAG 609 0.3957 MGSGNMNLPPGFYFSPTDEELVLHFLYSKASLPCHPNIIPDLDLSLLDPWEFNGKALSSGNQHYFFTEKKGNRSTENGYWKEIGVTNSIFSSDADNKVGIKKYLVFNLGKAPQGTETNWVMEEYHICSSGFNTASCGSTRRRRNSDQSWSKWVLCRVYEKRSQSQQGAKWYSDEDDSGTEVSWLDEVFMSLDDDLEEISLPN. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06294 202 Pfam No apical meristem (NAM) protein 9 126 IPR003441 GO:0003677|GO:0006355
Seca12g06294 202 Gene3D NAC domain 17 165 IPR036093 GO:0003677|GO:0006355
Seca12g06294 202 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Seca12g06294 202 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Seca12g06294 202 PANTHER NAC TRANSCRIPTION FACTOR 56 6 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06294 Seca-Chr12 154836953 154838045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06294 1 165 NAC Transcription Factor Family AT1G61110 42.045 3.55e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g06294 NAM 9.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06294 - - gmx:100779578 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06294 12 154836953 154838045 Seca12g06294 12 154836953 154838045 ECH