Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06291 ATGAACCAATCTCAAAACACTATTCCCTACTTATTCAGATGCCCCATCAGTTTAGATTTGTTTGAAGATCCTGTAACATTGTGCACTGGCCAAACCTATGACAGGTCAAACATTGAAAAATGGTTGGCTGCTGGTAACCTCACATGCCCTGTCACAATGCAGAAGCTTCATGATCCAACCATTGTTCCCAATCACACTCTTCGCCACTTGATTGATCAGTGGCTTCAGCTTGGTCCTCAATTTGAGTCTGGTAATGGTAACTCTGCAACTGCAGCTATCCATCATTTATCTGCTCTGAAACACACCCTTGAATCTCAGGATAGCAGCTTAGAGAACAAGCTCCAAGCACTTGAGAAAATCAAAGCCTTACCTGATCAGTATTGTTCTTTTAACAAATCATTTTTCCTCCAATTGGATTTCTTATCACTACTTTTGGAACTAGTTTTTGGAAGATTAGAAGCTCAAGTATCAAATCATCAAATGCACTTCATAGAGCTAGCAATTTGTTGCATCCTAAAATTGCTACCTCTTGGTAATTTGGAGCCTCTAAATATGATCAAAGATGAGTCCAAATTAGCAACATTTCTGCTATTGTTTGAAAAAGGTACTACCTTGGTTAAGACTAGTTTGTGTCATCTTATAGAGTCAACATCATCATCTCAGACAGAAGAGTTATGTTCTATTCTTGGAAACTCTCACAAACTAGTGCATGAGATTGTTCTAGCTGTTCACCAAAATAACAAGGTTTCTGAGGATGCAATTAGAGGCATGTCAGCACTTTGTTCCTTGCAATCTAACAGAGAGAGTTTAGTGAGAGGAGGAGCAATAGATGGGATCATGACATGCATTATTTCTGAGAGAAGACAGAAGAACATGGCACCAGTGGCAATGGGAATAGTAGAGAAACTTTTGGAGGTAGAAAGTGCTAAAGAGGAATTGGTGAACTACCCAAATGTTATTAAAATTTTGGTTAACATGGTTTTCAAGGTGTCTGATCAAGAATGCAGTGATAGTGCTGTTGGGATACTTTTAATTATTTGCCATGATTTTGAGAGTGCAAGAGAGGAAGCCATTGAGTATGGAGTTTTGACTCGGTTGCTATTGCTTCTGCAGAGTCAGTGTGGTGCCACAACAAAATCAAAGGCAAGAATGCTGCTCAAATTGTTAAGATCCAAGATGGACTAA 1185 0.3907 MNQSQNTIPYLFRCPISLDLFEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPTIVPNHTLRHLIDQWLQLGPQFESGNGNSATAAIHHLSALKHTLESQDSSLENKLQALEKIKALPDQYCSFNKSFFLQLDFLSLLLELVFGRLEAQVSNHQMHFIELAICCILKLLPLGNLEPLNMIKDESKLATFLLLFEKGTTLVKTSLCHLIESTSSSQTEELCSILGNSHKLVHEIVLAVHQNNKVSEDAIRGMSALCSLQSNRESLVRGGAIDGIMTCIISERRQKNMAPVAMGIVEKLLEVESAKEELVNYPNVIKILVNMVFKVSDQECSDSAVGILLIICHDFESAREEAIEYGVLTRLLLLLQSQCGATTKSKARMLLKLLRSKMD. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06291 394 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Seca12g06291 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Seca12g06291 394 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Seca12g06291 394 Gene3D - 209 392 IPR011989 -
Seca12g06291 394 SUPERFAMILY RING/U-box 5 76 - -
Seca12g06291 394 Coils Coil 100 120 - -
Seca12g06291 394 CDD RING-Ubox_PUB 9 56 IPR045210 -
Seca12g06291 394 PANTHER WDSAM1 PROTEIN 6 392 IPR045185 GO:0061630
Seca12g06291 394 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Seca12g06291 394 SUPERFAMILY ARM repeat 96 379 IPR016024 -
Seca12g06291 394 FunFam RING-type E3 ubiquitin transferase 8 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06291 Seca-Chr12 154797767 154798951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06291 8 374 U-box Gene Family AT3G19380 30.469 2.03e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06291 - - gmx:100805322 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06291 12 154797767 154798951 Seca12g06291 12 154797767 154798951 ECH