Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06289 ATGAAATCTCCTATTACGATAAGGAAAGGTGATAAGAAGAAGAAGAAGAAGCCGAAGAGCTTCGATGAGCTCTTCTCTCAAAATTCACCGAGAAGCAGCAGGGATTTCGATGGCGGCGCCGCCAGTGAGAAGAAAGGGCTTCCGTTGCCTCTTCCCACCACACAGTTCGATCAGACCGTCGGATCTCCTTCCGTCTCTGGCTCCAGCGTCAGCTCCTCTGTCTCCTACGACGATCATCCAATCTCTCCTCAATTCAATGCCAACAACAGAGGACAAGATGAGGTGAGGCTCAATAATTTGAGGTCAAGAAGCCCAGGTCCTGGGTCAAGAGGACCCACCAGCCCTACATCACCTTTTCATCCAAGGTTGAATGTTTTGAGTCTTGACTCTCCTACAGGAAAGCAAGAGGATGGAAGGAGTCAATGCCATCCATTGCCACTTCCACCAGGCTCTCCTTCTAGTCCTTCTGCTCTCTCCAACACACGGGCAAATGGACTGTTAGAAAACACCACCAATAATCTGTCCAAGTGGAAGAAAGGAAAGCTTTTAGGCCGGGGAACATTTGGGCATGTTTATCTGGGATTCAATAGTGAAAACGGACAAATGTGTGCAATAAAAGAAGTCAGGGTTGTCTCTGATGATCAAACATCAAAAGAATGCCTCAAACAACTGAACCAGGAGATAAATTTGCTTAGTCAGCTTTCACACCCAAACATTGTTCAATACTATGGGAGTGAACCGGAAGAAGAATCACTTTCTGTTTATTTGGAATATGTCTCCGGTGGTTCTATCCATAAATTACTTCAGGAATATGGTCCGTTCAAGGAGCCTGTTATTCAAAACTATACTAGGCAGATCGTCTCCGGGCTTGCCTATCTACATGGAAGAAATACAGTACACAGGGATATCAAAGGGGCTAACATACTAGTTGACCCTAATGGTGAAATCAAACTAGCAGACTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCGATGCTTTCATTCAAAGGAAGTCCATATTGGATGGCACCTGAGGTTGTAATGAATACAAATGGTTATAGTCTTCCAGTTGATATATGGAGCTTGGGGTGCACAATTCTTGAAATGGCAATGTCGAAGCCTCCATGGAGTCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAATAGCAAAGATATGCCTGAAATCCCTGAGCACCTTTCAAATGATGCAAAGAATTTCATTAAGCTATGTTTACAACGGGACCCAACAGCTCGCCCAACAGCCCATAAGTTACTAGACCACCCCTTCATTCGAGATCAATCAGCGACAAAAGCTGCAAATGTCAGCATAACAAGAGATGCTTTCCCTTACATGTTTGATGGAAGTCGAACGCCGTTGATTGCGATGGATTCGAGTTCGGGGCAGCAAGAGTTCGATTATTTGTTCAAGTTGTTGATGATTGGGGATTCTGGGGTTGGCAAGAGTAGTCTTCTTCTCAGTTTCACCACCGATGATTTTCAAGATCTCTCCCCCACAATTGGTGTTGATTTTAAGGTCAAATATGTGATGATGGGGGGTAAAAAGCTGAAGCTTGCCATTTGGGATACTGCTGGTCAGGAGAGATTCCGAACACTGACAAGTTCTTACTACCGAGGGGCTCAAGGAATCATCATGGTTTATGATGTAACGCGGCGAGAAACTTTTACGAATCTTTCTGAAATATGGTCTAAGGAAATAGACCTTTATTCAACAAATCAAGACTGTATCAAGATGCTTGTTGGAAACAAAGTAGATAAGGAGGGTGATAGAGTTGTGACGAAGAAGGAGGGAATAGACTTTGCCAGGGAATATGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTTAATGTACAGCAATGCTTTGAAGAGCTTGTTTTGAAGATTCTGGATACACCTAGCCTCTTAGCCGAAGGTACTAAAGGGGTAAAAAAGAACATTTTTAAGGACAAGCCACCCTCTGATGCATCCACAACAAGTAGTTGTTGCTGA 2022 0.4357 MKSPITIRKGDKKKKKKPKSFDELFSQNSPRSSRDFDGGAASEKKGLPLPLPTTQFDQTVGSPSVSGSSVSSSVSYDDHPISPQFNANNRGQDEVRLNNLRSRSPGPGSRGPTSPTSPFHPRLNVLSLDSPTGKQEDGRSQCHPLPLPPGSPSSPSALSNTRANGLLENTTNNLSKWKKGKLLGRGTFGHVYLGFNSENGQMCAIKEVRVVSDDQTSKECLKQLNQEINLLSQLSHPNIVQYYGSEPEEESLSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMAMSKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKLCLQRDPTARPTAHKLLDHPFIRDQSATKAANVSITRDAFPYMFDGSRTPLIAMDSSSGQQEFDYLFKLLMIGDSGVGKSSLLLSFTTDDFQDLSPTIGVDFKVKYVMMGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWSKEIDLYSTNQDCIKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGTKGVKKNIFKDKPPSDASTTSSCC. 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06289 673 SMART rho_sub_3 480 642 IPR001806 GO:0003924|GO:0005525
Seca12g06289 673 Gene3D Transferase(Phosphotransferase) domain 1 174 453 - -
Seca12g06289 673 CDD Rab18 478 639 - -
Seca12g06289 673 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 646 IPR027417 -
Seca12g06289 673 MobiDBLite consensus disorder prediction 1 161 - -
Seca12g06289 673 MobiDBLite consensus disorder prediction 52 137 - -
Seca12g06289 673 Pfam Protein kinase domain 178 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06289 673 Pfam Ras family 479 640 IPR001806 GO:0003924|GO:0005525
Seca12g06289 673 SMART rab_sub_5 478 642 - -
Seca12g06289 673 NCBIfam small GTP-binding protein domain 476 634 IPR005225 GO:0005525
Seca12g06289 673 SUPERFAMILY Protein kinase-like (PK-like) 167 456 IPR011009 -
Seca12g06289 673 SMART ran_sub_2 483 668 - -
Seca12g06289 673 ProSiteProfiles small GTPase Rho family profile. 471 640 - -
Seca12g06289 673 ProSitePatterns Protein kinases ATP-binding region signature. 183 206 IPR017441 GO:0005524
Seca12g06289 673 ProSiteProfiles small GTPase Ras family profile. 470 673 IPR001806 GO:0003924|GO:0005525
Seca12g06289 673 CDD STKc_MEKK1_plant 176 433 - -
Seca12g06289 673 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 46 441 - -
Seca12g06289 673 SMART serkin_6 177 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06289 673 FunFam Ras-related protein RABC1 471 673 - -
Seca12g06289 673 SMART arf_sub_2 465 643 - -
Seca12g06289 673 FunFam Mitogen-activated protein kinase kinase kinase 175 457 - -
Seca12g06289 673 SMART ras_sub_4 475 642 - -
Seca12g06289 673 ProSiteProfiles Protein kinase domain profile. 177 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06289 673 ProSiteProfiles small GTPase Rab1 family profile. 473 673 - -
Seca12g06289 673 PRINTS Transforming protein P21 ras signature 582 595 - -
Seca12g06289 673 PRINTS Transforming protein P21 ras signature 500 516 - -
Seca12g06289 673 PRINTS Transforming protein P21 ras signature 617 639 - -
Seca12g06289 673 PRINTS Transforming protein P21 ras signature 478 499 - -
Seca12g06289 673 PRINTS Transforming protein P21 ras signature 518 540 - -
Seca12g06289 673 Gene3D - 471 673 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06289 Seca-Chr12 154774618 154785737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06289 29 458 MAP Kinase Kinase Kinase AT1G53570 64.835 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca12g06289 Pkinase 3.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06289 K04421 - gmx:100787064 680.633