Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06284 ATGGCCAAAACGAGATTGATTCCGGGATTTCGGTTCCATCCCACTGACGTTGAGTTGGTTATGTACTTTCTAAAGAGGAAAGTGATGGGGAAAAAGTTAATTGATAATGTCATTGCTGAACTTGACATTTACCAGTATGCTCCTTGGGATCTACCAGATAAATCTTGTCTGAGAAATGGGGATTTGGAATGGTACTTCTTGTGCCCGATAAAGAAGAAATATGGCAGTGGAACCAGGATGAATCGAGCTACAGAAATTGGGTATTGGAAAATTACTGGGAAGGATAGATCTGTTCAACACAATAATCATACTGTGGGGATGATCAAATCCCTGATATTTCACACCGGCAAAGCACCTCTTGGGGAACGAACGGATTGGGTTATGTATGAGTACAGGCTTGATGATAAGGACCTGACTGACAAAGGATTTGCTCAGGATTCCTATGTAATCTGTAAGGTATTTCAAAAGAAAGGTCGTGGTCCCATGAATGGTGCACAATATGGTAGACCTTTTAATGAGGAAGACTGGAATGATGAAGAAGCAGGGATACCTTTTGCTGATTCATCTGCTGCACCATTTCCCATTTTGCCTATGGCATCTAATTGTCCCCTTCCAAATGAGCAGCACCTGCCTTCTAGTGCATGTATTGGGTCAACATCCACATCATGTCTATCAGGATTGATTCCTTCTCCTGGTCCAGAAATTCCTTCACATCCAAGCAATCAAACTGTTAACAATGATGATGATATTTTATCAATGCTTGACATTTTCAAAGAAGACATGCCTGAGGAAAATGTTGCTGAAGGTGCACCTTCAAATGATTTTTTTGAGGGCTTGGGAGACCTGGATTACTGGGCTGCGTTCGGTGGTTTCTCCTCTGGCCAGAATGCTGAAGTTAGCACAAATGGAATGGCTACGCTGGGTGATGAAGTGTGGTTTGGCGACTTGGAATTCTTGGAGTTGATTGACCTAGACTCTCCATTGTTCTGA 990 0.4253 MAKTRLIPGFRFHPTDVELVMYFLKRKVMGKKLIDNVIAELDIYQYAPWDLPDKSCLRNGDLEWYFLCPIKKKYGSGTRMNRATEIGYWKITGKDRSVQHNNHTVGMIKSLIFHTGKAPLGERTDWVMYEYRLDDKDLTDKGFAQDSYVICKVFQKKGRGPMNGAQYGRPFNEEDWNDEEAGIPFADSSAAPFPILPMASNCPLPNEQHLPSSACIGSTSTSCLSGLIPSPGPEIPSHPSNQTVNNDDDILSMLDIFKEDMPEENVAEGAPSNDFFEGLGDLDYWAAFGGFSSGQNAEVSTNGMATLGDEVWFGDLEFLELIDLDSPLF. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06284 329 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Seca12g06284 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 200 - -
Seca12g06284 329 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Seca12g06284 329 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Seca12g06284 329 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06284 Seca-Chr12 154737830 154741161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06284 1 260 NAC Transcription Factor Family AT5G09330 51.773 4.07e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g06284 NAM 6.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06284 - - gmx:100778933 416.387