Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06273 ATGGACAATAACAACAGTACTACCACCACTTGGAATCCGGATCAAACAAATGTTCTCCTCCAAGCCCAAGATCATCACCACCAAATCCCTATGGATTCTGGAATTTGGCCTAACTACCACCTCCTTCAAATGCCATCTTCATCCTCCACCATCAACATAGCAACACCTTCCTCTTCTTCTTCAGGAATATCCCTCAGTGACATATTAGGAATCCACATGGAAGAAGAATTAGAAGAAGAAGAGCTAGGTGCCATGAAGGAGATGATGTACAAGATTGCAGCGATGCAGCCAGTGGACATAGACCCAGCCTCCATCAGGAAACCAAAGAGAAGAAACGTTCGAATAAGTGATGACCCTCAGAGTGTGGCTGCAAGGCATAGGAGAGAGAGGATCAGTGAGAAAATGCGCATCCTTCAAAGACTTGTACCTGGTGGAACCAAAATGGACACTGCTTCTATGCTTGATGAAGCCATTCTCTATGTCAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCAACTCCTCCTACAAGTATTCCTTTATTAGCCCCTTCTTGTGATTGGCCTTTTGCACCAAATGTATTACCCAATTCTGTCGATATTCCGGCCGGAGTGGGATTCGCCGCCGGAGGACATGGCCAGGACCAGCCTTGTGATGCCTCCTCCACCTTGTGA 675 0.4622 MDNNNSTTTTWNPDQTNVLLQAQDHHHQIPMDSGIWPNYHLLQMPSSSSTINIATPSSSSSGISLSDILGIHMEEELEEEELGAMKEMMYKIAAMQPVDIDPASIRKPKRRNVRISDDPQSVAARHRRERISEKMRILQRLVPGGTKMDTASMLDEAILYVKFLKRQIRLLQSTPPTSIPLLAPSCDWPFAPNVLPNSVDIPAGVGFAAGGHGQDQPCDASSTL. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06273 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 173 IPR036638 GO:0046983
Seca12g06273 224 SMART finulus 121 170 IPR011598 GO:0046983
Seca12g06273 224 CDD bHLH_AtIND_like 116 173 - -
Seca12g06273 224 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 183 IPR045843 GO:0003700|GO:0006355
Seca12g06273 224 FunFam BHLH transcription factor 118 179 - -
Seca12g06273 224 Pfam Helix-loop-helix DNA-binding domain 125 164 IPR011598 GO:0046983
Seca12g06273 224 Gene3D - 118 176 IPR036638 GO:0046983
Seca12g06273 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06273 Seca-Chr12 154630028 154630702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06273 84 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 72.549 1.62e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g06273 HLH 2.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06273 - - gmx:100775296 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06273 12 154630028 154630702 Seca12g06273 12 154630028 154630702 ECH
Seca12g06273 12 154630028 154630702 Seca4g01979 4 33367482 33369033 PCT