Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06271 ATGGCTGAAAGCTCTCTTCAAATTGATTTGATGGACGGACCTGAATTTGCACCCAGTGTTGCTAGTATCAGTAGTTCAAAGTCGTCCTATTTGGAAAGAAGTGGTAAGTTAAAACCCAGAATGGGATTCTCATCCAAGGAACCATTTCCTGGAGGCAGAGGTTCAAATAATGATGATGTTACGAATAAAGACTACAGTGTTTTGGATGCAACAGTTGCATGGAAAACTGATGGAAGTTGCAGCATGACAATGTCTCCCGGGTTTGAGGAATGGAAAAATAAGAAGCTTGGTCAATCCCTAAAAGATAGTTGCAACAGATCTAGGAGTAGCAGGAGCCGGAGCCCTCCACATGGTTTTATGTGGGATTCAGGAGTCATTGACAAAAATAGAGCAAGTGCTGGACGATTAACACAACCATGTAGAGATTTTGCGGCTGGGAAATGCAGAAGAGGCAGCCATTGTCATTTCCTTCACCTTGGTAATCAAAATTTTGAGGATAGTTGGGAAAGTAGACACAGACAAGATGGAGCTCCCAGATATTCTGCTGCCCATGAGAGTGGGGACTATTGTCTTACAAGTGGAAGATCTGATGAAGCTTGTATTAATTTTTTGAAAGGAAGGTGTAGAATGGGAGCATCATGCAAGTATGTGCATCATGATAATTCTGATGGGTTTGGTAAAGTTTCTGCGGATGAATCATCTAGGGATCGGGTAATTAATAGAAGGCACATGGAGAACTCTTTCGAGCAGGGTGGTTGGCGTTATCCAAACCACATTGGTACTCCTTGCAAATTTTTTGCTTTTGGGAATTGTCGTAATGGTAAACATTGTAGGTTTTCTCATGATAGACAAGCATGTAGGAGCCCTAATAGAAGATTAAGCGATGATAGGACAAGGATTAATCAAGGTGGAGATCAGGTATTGGATAGACCAAAATTGAGTGATTCTGATACTCCTAATCGAAGGATAAGAGATGATAGATGGTGTTCAGATGGCAGTATAGCTGCTGTAGATAAAGTTTGGGATGGTCCAAACAAGAATCATTTAGTTGCTGTCTTTGATACTGCAAAACTGGTTGAGGACAACAAAAATGGAGTTATGAGCTTCACTGCTTGGCCAATGAGTGATGGGTGGGGCCATAACTTAGACAAGAACAGAGTGCATGGTGAGTCGCCATTTTCAAGTTATAAGAAGGAAGCCAACTGTTGGACAGCAGAAAATGCAATTGACAACATTCGCATTTCCCAGTCAGTAGATAGAAGCATTTGGCCTGGTGATGAAAAAATGTCTCCTGATTGGAATTACGGTGAGCGATCTTCCAGCCGTATTAAAGAAGAGCACAGGCAGAATAAGCAACAAGTTTCTCCAGGACAAGGATATAATCATGCTGCTCGAAATGTAAATGCTTTGCATTCTTCAAGCTATCATGGTGTTGTACAGAGTCATGTGTTGCATTCAATTGCTCTTCCAAGACTAAGAACTGAAGGTATGCAGAACCAGGAAGTCTCTACTGAGAAAAGGTATACTGTTGAGTCAATTGCAAGCCTATCACAAGTTGGTTCAAGAAATCATCCAACTCACAACATGGTTAGCAAAGAACAGCTTGCTCAACTTACCTGCCTCTCAGCTTCTCTGGCACATTTCCTTGGAGCAGGTAGGCAGCTCCTGCAACTTAATACATCTTCAAGCTCTCATGATACAAAGGGCGTGCCCTCTGTAGACCAAACTGAAGGGTCTGGTGATCCAATGTCTGATAGTATGGAGACAAGTGGGGTCCCCCAAACCTTTTCACCTATTGAAAATGTTCCAAACGATGCAGTAGAAATTCCATCACTGTTATCTAACTCGGGACAAAATTTTGATGATTTTTGTAAGACTGCATTTTCATCAGAACTTGTCAAGAGTGAAAATGAAATGACAGCTGAAGAGAATGATCCTTTGGAAGACATGGACAAAAGTGGTGGATCTGATGAGGCCAACAAAATAAAGGATGTGAAGGGGATTCGTGCATTTAAATTTTCATTAGTGGAGTACATTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTACTGATAAAGTAACTGGTTCAGTGCAGCGGGAACATATTCCTCAGACACAAGACAAAATTGACCACTATTTATCATTTTCGAAACCAAAGCTTAACAAACTTGTACAGGTCAGTGGTGGCTCTCTCACAGATTTCCGACATGTGTATGGTGTATTCAAACTTTTGTCACCCATTTAA 2289 0.4111 MAESSLQIDLMDGPEFAPSVASISSSKSSYLERSGKLKPRMGFSSKEPFPGGRGSNNDDVTNKDYSVLDATVAWKTDGSCSMTMSPGFEEWKNKKLGQSLKDSCNRSRSSRSRSPPHGFMWDSGVIDKNRASAGRLTQPCRDFAAGKCRRGSHCHFLHLGNQNFEDSWESRHRQDGAPRYSAAHESGDYCLTSGRSDEACINFLKGRCRMGASCKYVHHDNSDGFGKVSADESSRDRVINRRHMENSFEQGGWRYPNHIGTPCKFFAFGNCRNGKHCRFSHDRQACRSPNRRLSDDRTRINQGGDQVLDRPKLSDSDTPNRRIRDDRWCSDGSIAAVDKVWDGPNKNHLVAVFDTAKLVEDNKNGVMSFTAWPMSDGWGHNLDKNRVHGESPFSSYKKEANCWTAENAIDNIRISQSVDRSIWPGDEKMSPDWNYGERSSSRIKEEHRQNKQQVSPGQGYNHAARNVNALHSSSYHGVVQSHVLHSIALPRLRTEGMQNQEVSTEKRYTVESIASLSQVGSRNHPTHNMVSKEQLAQLTCLSASLAHFLGAGRQLLQLNTSSSSHDTKGVPSVDQTEGSGDPMSDSMETSGVPQTFSPIENVPNDAVEIPSLLSNSGQNFDDFCKTAFSSELVKSENEMTAEENDPLEDMDKSGGSDEANKIKDVKGIRAFKFSLVEYIKELLKPTWKEGQITKEDYKAIVKKVTDKVTGSVQREHIPQTQDKIDHYLSFSKPKLNKLVQVSGGSLTDFRHVYGVFKLLSPI. 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06271 762 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 158 IPR000571 GO:0046872
Seca12g06271 762 Pfam RNA-binding, Nab2-type zinc finger 199 218 - -
Seca12g06271 762 MobiDBLite consensus disorder prediction 635 658 - -
Seca12g06271 762 MobiDBLite consensus disorder prediction 288 303 - -
Seca12g06271 762 MobiDBLite consensus disorder prediction 99 124 - -
Seca12g06271 762 MobiDBLite consensus disorder prediction 423 459 - -
Seca12g06271 762 ProSiteProfiles Zinc finger C3H1-type profile. 134 161 IPR000571 GO:0046872
Seca12g06271 762 MobiDBLite consensus disorder prediction 102 116 - -
Seca12g06271 762 MobiDBLite consensus disorder prediction 636 658 - -
Seca12g06271 762 Gene3D - 256 318 - -
Seca12g06271 762 ProSiteProfiles Zinc finger C3H1-type profile. 194 221 IPR000571 GO:0046872
Seca12g06271 762 SMART c3hfinal6 134 160 IPR000571 GO:0046872
Seca12g06271 762 SMART c3hfinal6 258 283 IPR000571 GO:0046872
Seca12g06271 762 SMART c3hfinal6 194 220 IPR000571 GO:0046872
Seca12g06271 762 MobiDBLite consensus disorder prediction 288 324 - -
Seca12g06271 762 MobiDBLite consensus disorder prediction 561 601 - -
Seca12g06271 762 Gene3D - 130 231 - -
Seca12g06271 762 ProSiteProfiles Zinc finger C3H1-type profile. 262 284 IPR000571 GO:0046872
Seca12g06271 762 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 21 740 - -
Seca12g06271 762 MobiDBLite consensus disorder prediction 310 324 - -
Seca12g06271 762 MobiDBLite consensus disorder prediction 16 62 - -
Seca12g06271 762 SUPERFAMILY CCCH zinc finger 259 282 IPR036855 GO:0046872
Seca12g06271 762 Pfam CCCH-type zinc finger 262 282 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06271 Seca-Chr12 154594004 154602486 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca12g06271 zf-CCCH 0.0001 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06271 - K22909 gmx:100783856 834.713