Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06270 ATGGTGATGGTTAGTGTGTTGAATGATGCTCTGAAGAGCATGTACAATGCTGAGAAAAGGGGAAAGCGCCAAGTCATGATCAGGCCATCTTCCAAAGTCATTATCAAATTCCTTTTGGTGATGCACAAGCATGGATACATTGGAGAGTTTGAGTATGTTGATGACCACGGGGCTGGCAAAATTGTGGTTGAATTGAATGGTAGGCTGAATAAGTGTGGGGTTATTAGTCCCCGTTTTGATGTGGGTGTCAAAGAGATTGAAGGTTGGATTGCTAGGCTTCTCCCCTCAAGACAGGTTAGTTAA 303 0.4356 MVMVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMHKHGYIGEFEYVDDHGAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWIARLLPSRQVS. 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06270 100 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 99 IPR000630 GO:0003735|GO:0005840|GO:0006412
Seca12g06270 100 Gene3D - 1 69 - -
Seca12g06270 100 SUPERFAMILY Ribosomal protein S8 3 98 IPR035987 GO:0003735|GO:0005840|GO:0006412
Seca12g06270 100 FunFam 40S ribosomal protein S15a 1 69 - -
Seca12g06270 100 Pfam Ribosomal protein S8 7 84 IPR000630 GO:0003735|GO:0005840|GO:0006412
Seca12g06270 100 Gene3D - 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06270 Seca-Chr12 154565510 154565944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06270 1 98 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 92.857 2.42e-64 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06270 K02957 - tcc:18586704 187.963