Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06269 ATGGCTTCTCTCTTCTCCCTCTCTCTTTTGAGTCTTTTCCTGTTCCTCCTCACCCTCTCCTCCGCTTCCCACCATAACCACCCTTCTCCCTTTCCCTCTCCCTCTCCCAAACCCAAACCCTCCCTCTCCACCAACGCAACGCCGGAGATCCAGCAAGCCTGCAAGGCCACCCGTTTCCCTCAACAATGTGAATCATCTCTCTCCCAATCCAACCACCTCCCCTCAAACCCGACCTCTCTCCAACTCCTCCAATCCGCCATCGCCATCTCCTCCGAAAACCTCGTCACCGCCCAATCCATGGTGAAGTCCATCCTCGACTCCTCCGCCGCAAGCCGCAACCGCACCGTCGCCGCAACCACCTGCCTCGAGGTCCTCAACAACTCTCAGCACCGCATTTCCCTCGCCACCGACGCCCTGCCACGTGGCAGGACCAAGGACGCACGCGCGTGGCTGAGCGCCGCCCTCGTATACCAGTACGACTGCTGGAACGGCCTCAAGTACGCAAACGACTCCCGCGCGGTGGGCGAAGCGATGTCGTTTTTCGAATCCCTATACACGCTCTCTAGCAACGCACTCAGCATTGCGTTTTCGTACGACGTGTACGGAAACGACACCGCATCATGGAAGCCTCCCGCGACGGAGCGGGACGGGTTGTGGGAGGCATCCGGGTCGGGAAGCGGGTCGGTGCCAGGGATTCCGTCGACGTTGACGCCAGACGTTACTGTCTGTAAGGAAGGAGGGAACGAGTGTTACAAAACAGTGCAGGAAGCGGTTAACGCGGCACCGGATAACGGCGTTGACGGAAAGAAGTTTGTGATATACATAAAAGAAGGGGTTTATGAAGAGACCGTTAGGGTTCCGTTAGAGAAGAGGAATGTAGTGTTCTTAGGCGACGGAATGGGGAAAACAGTCATCACTGGTTCTGCAAACGTAGGCCAACCCGGAATGACAACTTACAATTCAGCCACACTTGCGGTTCTTGGAGATGGATTCATGGCAAAGGATCTCACAATCCAAAACACAGCAGGTCCTGATGCACACCAAGCAGTGGCTTTCAGATTAGACAGTGATCTCTCTGTAATTGAGAATTGTGAATTCATTGGAAATCAAGATACTCTTTATGCTCATTCCCTACGCCAATTTTACAAATCATGCCGCATTGTAGGCAATGTGGACTTCATCTTTGGAAACTCTGCTGCAATTTTCCAAGACTGTCAGATCCTGGTTTGTCCCAGGCAATTGAAGCCTGAGAAAGGAGAAAACAATGCCATCACGGCGCATGGTAGAACAGACCCTGCACAGAGTACAGGGTTTGTTTTCCAGAACTGCTTGATTAATGGCACGGAGGATTACATGGCTTTGTATCATAGCAAGCCTCAAGTGCATAAGAACTACTTGGGAAGGCCGTGGAAGGAATATTCTAGAACTGTTTTTATTAATTCGTTGTTGGAAGCGCTTGTCACTCCTCAGGGTTGGATGCCATGGAGTGGTGACTTTGCTCTCAAGACACTTTACTATGGGGAATTTGAGAATTCAGGACCTGGTTCTGATTTGTCTCAGAGGGTGCCTTGGAGTAGTAAGGTCCCAGCTGAGCATGTGTTTACGTATTCAGTGCAGAATTTCATTCAAGGAGATGAGTGGATGCCATCATCTAATCGTAGGACAAGCAGGGGACATTAG 1680 0.5167 MASLFSLSLLSLFLFLLTLSSASHHNHPSPFPSPSPKPKPSLSTNATPEIQQACKATRFPQQCESSLSQSNHLPSNPTSLQLLQSAIAISSENLVTAQSMVKSILDSSAASRNRTVAATTCLEVLNNSQHRISLATDALPRGRTKDARAWLSAALVYQYDCWNGLKYANDSRAVGEAMSFFESLYTLSSNALSIAFSYDVYGNDTASWKPPATERDGLWEASGSGSGSVPGIPSTLTPDVTVCKEGGNECYKTVQEAVNAAPDNGVDGKKFVIYIKEGVYEETVRVPLEKRNVVFLGDGMGKTVITGSANVGQPGMTTYNSATLAVLGDGFMAKDLTIQNTAGPDAHQAVAFRLDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRIVGNVDFIFGNSAAIFQDCQILVCPRQLKPEKGENNAITAHGRTDPAQSTGFVFQNCLINGTEDYMALYHSKPQVHKNYLGRPWKEYSRTVFINSLLEALVTPQGWMPWSGDFALKTLYYGEFENSGPGSDLSQRVPWSSKVPAEHVFTYSVQNFIQGDEWMPSSNRRTSRGH. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06269 559 PANTHER PECTINESTERASE 18 549 - -
Seca12g06269 559 CDD PMEI-like_3 53 194 - -
Seca12g06269 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 194 IPR035513 -
Seca12g06269 559 SUPERFAMILY Pectin lyase-like 235 552 IPR011050 -
Seca12g06269 559 FunFam Probable pectinesterase/pectinesterase inhibitor 51 48 197 - -
Seca12g06269 559 Pfam Pectinesterase 239 545 IPR000070 GO:0030599|GO:0042545
Seca12g06269 559 MobiDBLite consensus disorder prediction 26 45 - -
Seca12g06269 559 FunFam Pectinesterase 233 559 - -
Seca12g06269 559 SMART PMEI_2 45 194 IPR006501 GO:0004857
Seca12g06269 559 Gene3D - 233 558 IPR012334 -
Seca12g06269 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 197 IPR035513 -
Seca12g06269 559 NCBIfam pectinesterase inhibitor domain 11 194 IPR006501 GO:0004857
Seca12g06269 559 Pfam Plant invertase/pectin methylesterase inhibitor 50 194 IPR006501 GO:0004857
Seca12g06269 559 Coils Coil 557 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06269 Seca-Chr12 154555148 154558000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06269 43 547 Carbohydrate Esterase AT5G09760 66.862 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06269 - - mtr:11442613 894.419