Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06265 ATGCTGAGCTCTGATGATGGAGATATTGATGTATTCTTTGACTCAGTGGATAGTTTGTCAGCTCAAGATTCTGTTTTAGCTAAAGAAGAGTTTGGTCATGGAGGGTATGGTTGTGATTATGATGAGATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAAAGACGGGAACGTTTCCTGCAGGGTATGGGTTTAGCTGATACTTCTTCTAAGGTTTGTTCACAAGAGAAAATGATGAGCCTTGATGACTCATCCATCAGCTTGGGACTTGAGAGGATCATGGAGTGCAGTGGAGCAGTCTCAAATGCTTGCATTTCGCATACTGATCAAGCATCTGACAAGTTGGTTCTCTCTGGAAGGAAAGCGGCTTCTGAAGCAGAAGTTTTGTTGGATGAAGCAGATGCAAGTTTTCAAGGGAAAGTGAATGAGCTCTCTTCTACAACACAGGAGCACAGACACAGAGAAGCTGAGGCTCAAGAAGAATTTCAGGATTTTGACATTGGTAAACATAAAAGGAAAAATTGGTGGAAGCACTTTGTAAACATCAGGAAAGGTGATGAAGGAAAAGTCAGATCAAAATTGAATACAGGGACAAATAAAACTAGTAGGATAAAGGTAAGGCAGAATAAAAAGAGGTGGCTGGAGTTCAGTGGGCTATATATTGGACAAGAGATTAGAGCACACAAAGGTCTAATTTGGACTATGAAATTTAGTCCCAATGGTAAATATTTAGCTAGTGGAGGTGAAGATGGTGTTGTGCGCGTATGGCGTGTTACTTCACTGGATACATCTAGTATTTGTTTCACCACAGAAGGCAGTACAGCTAGTAGAAAAGTGAAACTTGGCAACTCTTTTCATTGGAAGAAACACTCGAGCCAACCCTTCATTTTCCTTCCAAATAATATTTTTCAAATTGAAGAATCACCACTGCAAGAATTCCTTGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTCTCATCTTCTATGGATAAAACTGTTCGCTTGTGGAAAATTGATTGTAATCAAAGTCTACATGTTTTCCATCACAATGACTATGTGACATGCATTCAGTTCAACCCTGTTGATGAAAATTACTTCATCAGTGGGTCTATTGATGGTAAAGTTCGAATTTGGGGGATACATGAAGCAAGAGTTATTGACTGGGCAGATGTACGAGATATCATAAGTGCTATAAGTTACCAGCAAGATGGGAAAGGATTTGTAGTTGGTTCTGTTACTGGCACTTGTCATTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCGCAGATAGATGTCCATGGAAAGAAGAAAGCATCAGGCAACAAGATTACTGGCATTCAGTACACCCAAAAAAACTGTCAGAAAATTATGATCACATCAGAAGATTCCAAAATTCGCATATTGGATGGCATTGAGCTTGTTCAGAAATACAGAGGTTTTCCTAAGTCTGGAAGCCAGATGTCTGCTTCATTTACATCAAGTGGAAAACATATAATTTCAGTTGGAGAGGACTCACGTGTGTATATTTGGAACTACAATGATTTGGCAAATGCCTCTTCCAAACAAACAAAATCTGAGTATTCCTGTGAGTACTTTTTCTCCAAGGGTGTTACTGTTGCAATACCTTGGTCAGGCATGAAAGCAGATCAAAGGGAATCTAGCAATAAATTTTCCCACTTTTCTTCAGAAACAAAAACCCCCCCAGAAGCAGTTGCTCCTGAGGTTAGAGATTCAGAACGTTTTTCTCTTGGTAATTGGTTCTCCATGGATGGTACGAACCGAGGTTCAATGACATGGCCTGAGGAGAAACTTCCTACCTGGGATTTACCTCTTGAAGAAAATGAATATAATCACCAGAAGTTATGTCACGAAGATACTAGCCATGAAAGAAGTGTATCAGAAACATGGGGTCTATCAATTGTGGTAGCTGGTCATGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCCATTAGGCTTTAG 2010 0.3995 MLSSDDGDIDVFFDSVDSLSAQDSVLAKEEFGHGGYGCDYDEIWVKEPVSVKERRERFLQGMGLADTSSKVCSQEKMMSLDDSSISLGLERIMECSGAVSNACISHTDQASDKLVLSGRKAASEAEVLLDEADASFQGKVNELSSTTQEHRHREAEAQEEFQDFDIGKHKRKNWWKHFVNIRKGDEGKVRSKLNTGTNKTSRIKVRQNKKRWLEFSGLYIGQEIRAHKGLIWTMKFSPNGKYLASGGEDGVVRVWRVTSLDTSSICFTTEGSTASRKVKLGNSFHWKKHSSQPFIFLPNNIFQIEESPLQEFLGHSSDVLDLAWSNSDILLSSSMDKTVRLWKIDCNQSLHVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEARVIDWADVRDIISAISYQQDGKGFVVGSVTGTCHFYVASGKYFQLEAQIDVHGKKKASGNKITGIQYTQKNCQKIMITSEDSKIRILDGIELVQKYRGFPKSGSQMSASFTSSGKHIISVGEDSRVYIWNYNDLANASSKQTKSEYSCEYFFSKGVTVAIPWSGMKADQRESSNKFSHFSSETKTPPEAVAPEVRDSERFSLGNWFSMDGTNRGSMTWPEEKLPTWDLPLEENEYNHQKLCHEDTSHERSVSETWGLSIVVAGHDGTIKTFHNFGLPIRL. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06265 669 Gene3D - 214 549 IPR015943 GO:0005515
Seca12g06265 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 345 - -
Seca12g06265 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 394 IPR001680 GO:0005515
Seca12g06265 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 259 - -
Seca12g06265 669 SUPERFAMILY WD40 repeat-like 219 659 IPR036322 GO:0005515
Seca12g06265 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 352 IPR001680 GO:0005515
Seca12g06265 669 Pfam WD domain, G-beta repeat 223 255 IPR001680 GO:0005515
Seca12g06265 669 Pfam WD domain, G-beta repeat 307 343 IPR001680 GO:0005515
Seca12g06265 669 Pfam WD domain, G-beta repeat 348 384 IPR001680 GO:0005515
Seca12g06265 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 384 - -
Seca12g06265 669 FunFam WD repeat-containing protein 44 208 551 - -
Seca12g06265 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 265 IPR001680 GO:0005515
Seca12g06265 669 PANTHER WD REPEAT DOMAIN 44 7 666 IPR040324 -
Seca12g06265 669 SMART WD40_4 305 343 IPR001680 GO:0005515
Seca12g06265 669 SMART WD40_4 478 519 IPR001680 GO:0005515
Seca12g06265 669 SMART WD40_4 387 426 IPR001680 GO:0005515
Seca12g06265 669 SMART WD40_4 346 385 IPR001680 GO:0005515
Seca12g06265 669 SMART WD40_4 437 477 IPR001680 GO:0005515
Seca12g06265 669 SMART WD40_4 217 256 IPR001680 GO:0005515
Seca12g06265 669 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Seca12g06265 669 PRINTS G protein beta WD-40 repeat signature 243 257 IPR020472 -
Seca12g06265 669 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06265 Seca-Chr12 154520571 154525798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06265 309 516 U-box Gene Family AT2G33340 26.222 1.70e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06265 K20241 - gmx:100819135 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06265 12 154520571 154525798 Seca12g06265 12 154520571 154525798 ECH
Seca12g06265 12 154520571 154525798 Seca4g02625 4 44972380 44977882 PCT