Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06263 ATGGTTAGAGACGATCTATACATCACGGTTCCTAGCTTCTTCCGGTGTCCCATATCCCTTGACGTCATGAAATCCCCTGTGAGCCTCTGTACCGGCGTTACTTACGACCGTTCCAGCATCCAACGCTGGCTTGACGATGGCAACAACACCTGTCCCGCCACCATGCAGATTCTTCATAACAAGGAGTTTGTTCCTAACCGAACCTTACAGAGGGTCATCCAGATCTGGTCAGACTCGGTTCGCCACCGAGTCGACTCATCCGAGTCACCCCCCGCTACCGAATCGGTCCTTGCTCGGGACCAACTCCTCGCCGCCATCAACGACTTGGAGGATTCCCGTAGCGAGAACCGGTTCGACTCTGTCTCGAAAATCGTTAGTTTCGCACAAGATTCCGAAGAGAATCGCGATTTTCTCGCGAGAACGGAAGGTTTCGTGCCGGTGCTTGTTGGTTTGCTCGGCAATGTCGATTCCAGAGTGCAACGGAGCATTGAATTCCTCGAACTGGTTGTTAAGGCGTTGGATTTGGTTCTAAGTAAACTAGAAAATCGCGAGGAGTTGAAAATTTTGATGCTGAAGAGCCAGGGACAAGGACAGAGTATAGATTCCGTGCTTCTTGTTCTGCAACAGGGAAGCTGCGAATCAAGGATTGCATCGGCTAGGGTTTTGAAATCCATCGCCATAGACGCGGAATCGAAGCTTTTGATAGCGGAAAAGGAAGGCCTGGTATCCGAATTGCTCAAATTAATCACGCCGGACAAAGATCCGAACCTAATCGAGAACGCTTTGTCGTGCTTGGTGGCAATCTCAACGCCGAAGCGGAACAAGGCGAAGCTGGTCCATCTAGGAGCCGTGAAGGTGTTGTCGAAACTTCTTTCAGCGTCAAATTTGAGCGTTTCGGTGGCGGAAAAGGTACTGAAACTGATCGAAACGATGTCGTCGACGAAGGAAGGGAGGGCGCAGATATGTGAAGAAGCGGAGTGCGTGGCGGCGATAGTGAACAAGGTTCTTAAAGTGTCCAGCATGGCAACGGAGCACGCCGTAACGACGCTGTGGAGTGTGTGCTATTTGTTTAGGGATCAGAAGGCACAAGAAGCCGTAACCAAAGCCAACGGTTTAACGAAGATTCTGCTTCTGATGCAGAGTAATTGCACGCCACAAGTGCGTCAAATGTCCTCAGATTTGCTTAAAATCTTTCGGGTTAATTCTAAGTCCTGTCTTTCTTCTTATGACACGAAAACTACACATATCATGCCTTTTTAA 1260 0.4944 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQILHNKEFVPNRTLQRVIQIWSDSVRHRVDSSESPPATESVLARDQLLAAINDLEDSRSENRFDSVSKIVSFAQDSEENRDFLARTEGFVPVLVGLLGNVDSRVQRSIEFLELVVKALDLVLSKLENREELKILMLKSQGQGQSIDSVLLVLQQGSCESRIASARVLKSIAIDAESKLLIAEKEGLVSELLKLITPDKDPNLIENALSCLVAISTPKRNKAKLVHLGAVKVLSKLLSASNLSVSVAEKVLKLIETMSSTKEGRAQICEEAECVAAIVNKVLKVSSMATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCTPQVRQMSSDLLKIFRVNSKSCLSSYDTKTTHIMPF. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06263 419 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Seca12g06263 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 89 IPR013083 -
Seca12g06263 419 SUPERFAMILY ARM repeat 104 402 IPR016024 -
Seca12g06263 419 SUPERFAMILY RING/U-box 5 78 - -
Seca12g06263 419 CDD RING-Ubox_PUB 11 58 IPR045210 -
Seca12g06263 419 Coils Coil 163 183 - -
Seca12g06263 419 Gene3D - 94 407 IPR011989 -
Seca12g06263 419 PANTHER WDSAM1 PROTEIN 9 407 IPR045185 GO:0061630
Seca12g06263 419 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Seca12g06263 419 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Seca12g06263 419 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06263 Seca-Chr12 154497489 154498748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06263 1 419 U-box Gene Family AT5G64660 55.269 1.29e-151 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06263 - - cam:101496984 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06263 12 154497489 154498748 Seca12g06263 12 154497489 154498748 ECH
Seca4g01992 4 33901557 33902789 Seca12g06263 12 154497489 154498748 ECH
Seca12g06263 12 154497489 154498748 Seca4g01992 4 33901557 33902789 PCT