Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06258 ATGGAGTTCTTGGACGAAGACGCGAGGCCAAGATTCATGTTCCAGTCTGGAGCACCCGCAGTTACAGAGTCACAATCCCCCCACAAACCCACCAAGCCACTCCTCTTCGTCACCCTCACTCTTTCTTCCCTTCTTTTCGCTCTCGCTCTCTTCTTCTTCCAATCCGAACCCTTCAAATCCATCCTCTTCTGGCTCTCATTCTCTCTCCTCATCGGCCCCTTCGCCCCTCTCTCCCTCACCGGCGGCGACGTCCGCGTTGGCCGCGGCCACATCGTCCAATTCCCCGATCATGACCCTGCCGCTGACGAGAAGAAGCCTCCGCAGCGCCGATCCAAGCCTCGCAGATCGGAGGAAGCCGCCGCCTTCGTTTCCCCGTCGCCGGTGACGGTCGCGAACGGCCGCGCGTTCGAGAAGCGCAGTGGCGAGGGGAACGGCGTTGCGGCGGCGGAGGAGGAGAAGGAGTGGAACGAAGAGGACGTTGAGATTCTGAAGAAGCAGATGGTGAAACATCCGGTGGGGAAACCAGGACGGTGGGAGGCGATCGCGGCGGCGTTCGGAGGGCGGCACAAGGCGGAGAGCGTGATCAAGAAGGTGAAGGAATTGGGGGATAAGAAAGTCGATGATTCGGACTCGTATGCGCAGTTTCTGAAGAAGAGGAAAGCATTGGATAAGAGAGTTGTTGAGGATGCAGGTGAAGAAGAAAGCGAATCGGTGACGGTGGAGAAGGTTGAAGGTGGTTGGAGTAACGCGGAGGATATTGCGTTGCTGAATGCTTTGAAAGCGTTTCCGAAGGATGTTCCCATGAGATGGGAGAAAGTTGCTGCTGCGGTTCCAGGGAAATCCAAGGCTGCATGCATGAAGAGAGTTACTGAATTGAAAAAAGGGTTTCGGAGTGCAAAAGCTGCATCTGAAGTGTAG 918 0.5621 MEFLDEDARPRFMFQSGAPAVTESQSPHKPTKPLLFVTLTLSSLLFALALFFFQSEPFKSILFWLSFSLLIGPFAPLSLTGGDVRVGRGHIVQFPDHDPAADEKKPPQRRSKPRRSEEAAAFVSPSPVTVANGRAFEKRSGEGNGVAAAEEEKEWNEEDVEILKKQMVKHPVGKPGRWEAIAAAFGGRHKAESVIKKVKELGDKKVDDSDSYAQFLKKRKALDKRVVEDAGEEESESVTVEKVEGGWSNAEDIALLNALKAFPKDVPMRWEKVAAAVPGKSKAACMKRVTELKKGFRSAKAASEV. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06258 305 CDD SANT 247 293 IPR001005 -
Seca12g06258 305 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 137 302 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Seca12g06258 305 FunFam Myb family transcription factor 241 301 - -
Seca12g06258 305 Gene3D - 147 207 - -
Seca12g06258 305 Gene3D - 239 304 - -
Seca12g06258 305 ProSiteProfiles Myb-like domain profile. 239 293 IPR001005 -
Seca12g06258 305 MobiDBLite consensus disorder prediction 93 123 - -
Seca12g06258 305 SUPERFAMILY Homeodomain-like 243 292 IPR009057 -
Seca12g06258 305 MobiDBLite consensus disorder prediction 93 117 - -
Seca12g06258 305 Coils Coil 146 166 - -
Seca12g06258 305 SUPERFAMILY Homeodomain-like 153 191 IPR009057 -
Seca12g06258 305 SMART sant 151 204 IPR001005 -
Seca12g06258 305 SMART sant 243 295 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06258 Seca-Chr12 154417383 154418300 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca12g06258 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06258 - - gmx:100780658 365.155