Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06257 ATGATGGATTATGAGCAATTTGATTACTCATTTAGCCCTCCCTACTTGAACCAACTCCATGAGTGTAGCTTAGAAAATGCATTTCCATTCCAAGTAGAAGATCCCTTATCTCCAAATACAATCCAGCTGAATGAAATGTTTGATCAAAACCAAGCAGAAGATCTATTATCTCCAAATACCATCCTAGATGAAATGTTTGATCAAGAGTCCATGGTGCAGCAACACACAAATAACCTGGACTTCGATTTCATGAATCATACCCAAAAAGCCCAGGAAAATGTGCACGTTTCAAGGGAAGGAGATTCTTGTTTGAAAGGGATTCAAGCAGAGCTAATGGAAGAGACTAGTTTAGCTGATCTCTTACTGACAGCAGCTGAAGCTGTTGAAGCACAGAACTGGCCTATTGCTTCAGACATAATTGAGAAACTAAACAATTTCTCATCTTTAGAAAATGGAGATAGTTTATTGAACAGGTTGGCTCTTTTCTTTGCTCAGGGTCTGTATTATAAAAGTATAAATGCTCCTGAATTGCAGTGTGTTCCTGTTTCTACACAGACAAGCACTTTCTGTGTGTTCCAGATACTTCAGGAACTTTCTCCCTATGTCAAATTTGCTCACTTCACTGCCAACCAAGCAATCCTTGAAGCCACAGAAGGTGCTGAGGATGTTCACATCATTGATTTTGACATCATGGAAGGGATCCAGTGGCCACCATTGATGGTAGACCTTGCAATGAGGAAGAGTACCAATACTTCCCTTAGAGTAACAGCCATAACAGTGGACCAGCAAAGTGCAGCCTCTGCTCAACAAACAGGGAGAAGGCTTCAAGAGTTTGCAGCTTCTATCAATTTTCCATTCATGTTTGATCAGATAATAATGGGGAGTGAAGTAGATGTTCAAAGAATTGAACTTGGTCACACACTCATAGTCAACTGCATGATACACCAGTGGATGCCTAACAGGAGTTTCTCATTGGTCAAAACTTTTTTGGATGGTGTAAGCAAATTATCTCCCAGGCTTGTTGTTTTAGTGGAAGAAGAACTGTTCAATTTTTCTAGACTCAAATCCATGTCCTTTGTGGAATTCTTCTATGAGGCTTTGCATCACTACACTGCACTTTCTGATTCACTTGCTAGTAGTATGTGGGGTAGCCACAACATGGAGTTAAAATTGATAGAAAAAGAGGTTCTGGGGCTCAGAATCTTAGACAGTGTAAGACAGTTTCCTTGTGAAAGAGAGGAGAGAATATTGTGGGAAGAAGGGTTATATTCCTTGAAAGGGTTTAAACGTGTTAGTATGAGTAACTCTAATATTTCACAAGCCAAGTTCTTGGTGAGCCTATTTGGGAAAGGGTATTGGGTGCAATTTGAGAAGGGTAGGTTGGATCTGTGTTGGAAGTCAAGGCCTTTGACTGCAGCTTCAATCTGGGTACCAACAGCTAATCTGAGTGACATGGTCAAATAG 1464 0.4044 MMDYEQFDYSFSPPYLNQLHECSLENAFPFQVEDPLSPNTIQLNEMFDQNQAEDLLSPNTILDEMFDQESMVQQHTNNLDFDFMNHTQKAQENVHVSREGDSCLKGIQAELMEETSLADLLLTAAEAVEAQNWPIASDIIEKLNNFSSLENGDSLLNRLALFFAQGLYYKSINAPELQCVPVSTQTSTFCVFQILQELSPYVKFAHFTANQAILEATEGAEDVHIIDFDIMEGIQWPPLMVDLAMRKSTNTSLRVTAITVDQQSAASAQQTGRRLQEFAASINFPFMFDQIIMGSEVDVQRIELGHTLIVNCMIHQWMPNRSFSLVKTFLDGVSKLSPRLVVLVEEELFNFSRLKSMSFVEFFYEALHHYTALSDSLASSMWGSHNMELKLIEKEVLGLRILDSVRQFPCEREERILWEEGLYSLKGFKRVSMSNSNISQAKFLVSLFGKGYWVQFEKGRLDLCWKSRPLTAASIWVPTANLSDMVK. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06257 487 ProSiteProfiles GRAS family profile. 108 477 IPR005202 -
Seca12g06257 487 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 97 472 IPR005202 -
Seca12g06257 487 Coils Coil 482 487 - -
Seca12g06257 487 Pfam GRAS domain family 118 476 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06257 Seca-Chr12 154412623 154414086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06257 117 476 GRAS Transcription Factor Family AT5G41920 35.027 1.07e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca12g06257 GRAS 3.6e-80 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06257 - - lja:Lj0g3v0198459.1 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06257 12 154412623 154414086 Seca12g06257 12 154412623 154414086 ECH