Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06256 ATGTTTGCTTCTACTTCCTTTACTTCACAGCTCATTCATGACCTTCTTGTGAATTCCCAAACAAGAAGGTTACTCCTTGAAAACCCACTTCACCAATCATCTCCCAACTCATCCGATTCAATGATGAACAACCACAATTCAACCACAACAGATTCATATTTCGGAAGCCGTGACTTTGATGCAAATGTTGTGATGATCCTTGCAGTCCTATTATGTGCTCTTATTTGCTCACTTGGGTTGAACTCCATCATAAGGTGTGCCTTAAGGTGTTCCAACATAGTCATGAGCAACAACAACAATAGCAACAACAACCCTTCATCTAGATTGGCTAACACAGGAATCAAGAAGAAAGCTCTGAAGACATTTCCAACAATAAGCTACACAACAGAGTTGAAACTGCCAGGTTTGGATACAGAGTGTGTGATATGTCTCTCAGAGTTCAATAATGGAGAAAAGGTGAGAATTTTGCCAAAATGCAACCATGGTTTCCATGTGAGATGCATTGATAAATGGCTAAGCTCACACTCATCATGCCCAAAGTGTAGACAGTGCCTAATTGAGACTTGCAAAAAGATTGTTGGGTCAAGAGCAGTACCACCAGTAGCAGTGATGCCAGTGCCAGAAACCATTATAAGGATAGAACCATTAGAGCCAGAAGGTGTGGAGCGTAGCTATAGGGAAGTGACTAGCTGCTAA 696 0.4152 MFASTSFTSQLIHDLLVNSQTRRLLLENPLHQSSPNSSDSMMNNHNSTTTDSYFGSRDFDANVVMILAVLLCALICSLGLNSIIRCALRCSNIVMSNNNNSNNNPSSRLANTGIKKKALKTFPTISYTTELKLPGLDTECVICLSEFNNGEKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGSRAVPPVAVMPVPETIIRIEPLEPEGVERSYREVTSC. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06256 231 Pfam Ring finger domain 139 182 IPR001841 -
Seca12g06256 231 PANTHER RING-H2 FINGER PROTEIN ATL78 16 221 IPR044602 GO:0016567|GO:0016740
Seca12g06256 231 SMART ring_2 140 181 IPR001841 -
Seca12g06256 231 FunFam RING-H2 finger protein ATL73 100 187 - -
Seca12g06256 231 SUPERFAMILY RING/U-box 118 187 - -
Seca12g06256 231 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Seca12g06256 231 CDD RING-H2_EL5-like 139 182 - -
Seca12g06256 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 186 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06256 Seca-Chr12 154389878 154390594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06256 23 186 C3H Transcription Factor Family AT3G10910 50.296 1.45e-45 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06256 K19040 - gmx:100527126 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06256 12 154389878 154390594 Seca4g02002 4 34087447 34088148 PCT