Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06255 ATGGCTGCCATGAACTCTAGTGTATTGGCTTGTAGCTATGCTAGATCTGTTGCAGGATGCTCTGATCTCAATGCCAAGCTCACTTCCATGCCTTCAGTTGCATCACCTGGTCACAAGTTACCTGTGATCAAGGCACAACAGAATGAAGGAAGGAGAGGTGCCCTTGTTCTCTTGGCAGCCACCCTTTTCACTGCTGCTTCCAATTCTTCTGCCAATGCTGGAGTCATTGAAGAATACCTTGAAAGAAGCAAGGCCAACAAGGAACTGAATGACAAGAAGAGGTTAGCTACAAGTGGGGCAAATTTTGCAAGAGCATACACTGTTCAATTTGGAACTTGCAAGTTCCCTGAGAACTTTACTGGTTGCCAAGATCTTGCCAAGCAAAAGAAAGTGCCATTTATTTCTGATGATTTGGAGCTTGAATGTGAAGGAAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA 477 0.4382 MAAMNSSVLACSYARSVAGCSDLNAKLTSMPSVASPGHKLPVIKAQQNEGRRGALVLLAATLFTAASNSSANAGVIEEYLERSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW. 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06255 158 FunFam Photosystem I reaction center subunit N 74 158 - -
Seca12g06255 158 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 158 IPR008796 GO:0009522|GO:0015979
Seca12g06255 158 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 44 158 IPR008796 GO:0009522|GO:0015979
Seca12g06255 158 Gene3D - 74 158 IPR044907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06255 Seca-Chr12 154384990 154385714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06255 1 129 Calmodulin-binding Proteins AT5G64040 67.606 4.22e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06255 K02701 - cave:132166062 250.366