Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06235 ATGGCAAAATCACCTGAAACTGAACTCCCTCTCAAAGCTTTTGGCTGGGCTGCAAGAGACACTTCTGGAATCCTCTCACCCTTTCATTTCTCCAGAAGGGAAAATGGCGATGATGATGTCACTCTCAAAATTCTATTTTGTGGGGTTTGCCATTCTGATCTGCACACTGTAAAAAACGATTGGGGTTTCACAACTTACCCTGTTGTTCCTGGGCATGAAATTGTTGGTGTTGTGACAAAAATTGGAAATAATGTGAAAAAATTCAGAGTGGGTGATAAAGTTGGAGTTGGTGTACTGGTGGAATCCTGTATGGCATGTGAGAATTGCCAGCAGGATCTGGAGAATTATTGTTCTAAACCTGTGTTTACTTATAATTCTCCTTACAAGGGGACACGAACCAATGGTGGCTATTCTGATTTTGTGGTTGTTCACCAGCGGTATGTGCTCCTATTTCCTGACAACTTACCCCTTGATGCTGGTGCTCCACTACTGTGTGCTGGGATTACTGTGTATAGCCCAATGATGTATTATGGGATGACCGAGCCTGGTAAACATTTGGGAGTGGCAGGGCTTGGTGGGTTAGGCCATGTTGCAATCAAATTGGGTAAAGCATTTGGGCTGAAAGTTACTGTCATTAGTACCTCGCCCAACAAGGAAGCTGAGGCCATTGAAAGACTTGGTGCTGATTCTTTTGTTGTTTCCACAGATCCTGAAAAAATGAAGGCAGCTATGGGAACAATGGACTATATCATAGACACAATTTCTGCTGTTCATTCCCTGATTCCACTGCTTGGCCTACTGAAGCTGAATGGAAAGCTGGTCATGGTGGGGTTACCTGGCAAGCCCCTTGAGCTGCCCGTCTTTCCAATAGTTGGTGGAAGGAAGCTTATAGGGGGGAGCAACTTCGGAGGGTTAAAGGAGACTCAGGAGATGCTTGATTTCTGTGGAAAGCACAACATAACTGCAGATATTGAACTGATAAAGATGGACCAAATCAACACAGCCATGGAAAGGCTTAGCAAAGCTGACGTGAAATATCGCTTTGTGATTGATGTGGCTAATTCCTTTTCAAGCCATGGAGTACACAAACTTTGGGTATACTCCACAGATGAACCTCTGTTCCCAAATAGCCCAACCAGGCCTCGATCAGAAATCCGCATTAAGGGCTATGATTATTCATCCGGGGTATGGCAATTTGAAGGGCAAGGATTTGTGCCTAATGGTACTTCTGGTGCATGCATTATGCAAGTGTTTGGGGCTCACCAAGGTCGTGCCACCACATTTATGCTTATAGCCTACAACAATTCACTTTTGTATTACAAGGGTCCAGTCCTTGTTCCAAACATATGGGACAGATGGTTCCAGTTAAATGTGATCCATGATGTGGAGGCTTCCATTGTTAAGGTTTATGTTGATGGGGTTCAGGTATATGAAGCCCCGGGTCAGGGAGGTAGCTCCCATTATTTCAAATTTGGTGTTTATACAACACAGGATGATCCTTCTTACTACATGGAGTCAAGGTGGAAGGGAATTAAAGTTCTTAGAAAATGTTCATGA 1557 0.4399 MAKSPETELPLKAFGWAARDTSGILSPFHFSRRENGDDDVTLKILFCGVCHSDLHTVKNDWGFTTYPVVPGHEIVGVVTKIGNNVKKFRVGDKVGVGVLVESCMACENCQQDLENYCSKPVFTYNSPYKGTRTNGGYSDFVVVHQRYVLLFPDNLPLDAGAPLLCAGITVYSPMMYYGMTEPGKHLGVAGLGGLGHVAIKLGKAFGLKVTVISTSPNKEAEAIERLGADSFVVSTDPEKMKAAMGTMDYIIDTISAVHSLIPLLGLLKLNGKLVMVGLPGKPLELPVFPIVGGRKLIGGSNFGGLKETQEMLDFCGKHNITADIELIKMDQINTAMERLSKADVKYRFVIDVANSFSSHGVHKLWVYSTDEPLFPNSPTRPRSEIRIKGYDYSSGVWQFEGQGFVPNGTSGACIMQVFGAHQGRATTFMLIAYNNSLLYYKGPVLVPNIWDRWFQLNVIHDVEASIVKVYVDGVQVYEAPGQGGSSHYFKFGVYTTQDDPSYYMESRWKGIKVLRKCS. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06235 518 PANTHER ALDEHYDE REDUCTASE 5 355 IPR047109 GO:0016616
Seca12g06235 518 FunFam Cinnamyl alcohol dehydrogenase 166 322 - -
Seca12g06235 518 Gene3D - 166 322 - -
Seca12g06235 518 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Seca12g06235 518 Gene3D - 16 352 - -
Seca12g06235 518 SMART PKS_ER_names_mod 23 350 IPR020843 GO:0016491
Seca12g06235 518 FunFam Putative cinnamyl alcohol dehydrogenase 6 323 352 - -
Seca12g06235 518 FunFam probable cinnamyl alcohol dehydrogenase 16 175 - -
Seca12g06235 518 Pfam Alcohol dehydrogenase GroES-like domain 38 149 IPR013154 -
Seca12g06235 518 SUPERFAMILY GroES-like 22 184 IPR011032 -
Seca12g06235 518 SUPERFAMILY Concanavalin A-like lectins/glucanases 377 500 IPR013320 -
Seca12g06235 518 CDD CAD1 14 351 IPR047109 GO:0016616
Seca12g06235 518 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 320 IPR036291 -
Seca12g06235 518 Pfam Alginate lyase 376 513 IPR014895 -
Seca12g06235 518 Pfam Zinc-binding dehydrogenase 193 314 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06235 Seca-Chr12 154235244 154246751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06235 12 356 Monolignol Biosynthesis Gene Families AT2G21730 70.690 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06235 K00083 - gmx:100819684 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06235 12 154235244 154246751 Seca12g06235 12 154235244 154246751 ECH