Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06230 ATGGACTTTGACGAGTACGAGTACTTGGAGAAGACAGTGGAGGAGCAGCAGCAGGAAGACAAAGATTCCTCGAAGAAGAAGAAGAGTGAGAGCACCGAAAAGAGCGAGAGGAGTTACCGGAAGCGCGACGTCGACGAAGATCTCGACGGCGAAGACAGGCGGAGTAAAAGGTCTAGGGGTGACGATGAGAATGGCTCGAAGAAGGATCGTGACAGAGAGAGAGACAGAGACCGAGACCGCTCCTCCTCCGGCCGCCACAGGGAGAGGGAGAGGGACGGAGAGAGGAGTAGCAGAGACAAAGAGAGGGATAGGGAGAAGGATAGGGATAGGGAAAGGAGAGATAGGGATAAGGATAGGGAAAAGGAACGGGAGAGAAGAGATAGAGAGAGGGAGAAGGAGCGAGAGAGAGAAAGGGAGGAGAGGGAGAGATCCAGGAGGAGCAGGAGTCGTTCCGAGAGAGATAGAGACAGAGAAAGAGAGCGAGATTTCGAAACGCGAGATGGCAGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCCTATCAGATGCCCCTAAAAGCAACAGAGAGAGATGTATATGAGTTCTTCTCAAAAGCTGGAAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGTTCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTTATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCCAATGCTACTGGTGGAGCTGCTGGTGCAACAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGGGAGATTTTTGAGCCATTTGGTCCAGTTGAGGTTGTCCAACTGCCTCTTGACATGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATCCGTAACAGATCATGTTGGGAGCCAGGATACAACTGCAAAATCTGCAGACTTGGATGATGATGAAGGTGGTTTGACTTTAAATGCCCACTCAAGAGCATTGCTTATGCAAAGGCTGGCTGGCTCTGACATTCCCACAAGCATTGGTGTGCCCGCTGTGAATGGGTCAGTTCCTGTTCAGCAGGCTTTTAGCTTGCCTATTGCGCCAGTTCTACCAACGCAAGTTGTGCCTACCCCAGTGGTAGAACCTGTAGGAAGCCCGAGCGAGTGTTTACTATTGAAGAATATGTTTGATCCAAGCACTGAGACGGAACCAGATTTTGATATAGACATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTATGTCGACAAGTAA 1494 0.4833 MDFDEYEYLEKTVEEQQQEDKDSSKKKKSESTEKSERSYRKRDVDEDLDGEDRRSKRSRGDDENGSKKDRDRERDRDRDRSSSGRHRERERDGERSSRDKERDREKDRDRERRDRDKDREKERERRDREREKEREREREERERSRRSRSRSERDRDRERERDFETRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATGGAAGATGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGSDIPTSIGVPAVNGSVPVQQAFSLPIAPVLPTQVVPTPVVEPVGSPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDK. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06230 497 SMART rrm1_1 190 262 IPR000504 GO:0003723
Seca12g06230 497 SMART rrm1_1 292 365 IPR000504 GO:0003723
Seca12g06230 497 MobiDBLite consensus disorder prediction 10 187 - -
Seca12g06230 497 CDD RRM1_RBM39_like 190 262 - -
Seca12g06230 497 MobiDBLite consensus disorder prediction 1 187 - -
Seca12g06230 497 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 497 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca12g06230 497 NCBIfam splicing factor, CC1-like family 68 497 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca12g06230 497 Coils Coil 118 154 - -
Seca12g06230 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 363 IPR000504 GO:0003723
Seca12g06230 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 258 IPR000504 GO:0003723
Seca12g06230 497 Gene3D - 286 383 IPR012677 -
Seca12g06230 497 CDD RRM3_RBM39_like 453 497 - -
Seca12g06230 497 Gene3D - 115 276 IPR012677 -
Seca12g06230 497 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 384 472 IPR029123 -
Seca12g06230 497 FunFam Splicing factor CC1-like 111 274 - -
Seca12g06230 497 SUPERFAMILY RNA-binding domain, RBD 450 496 IPR035979 GO:0003676
Seca12g06230 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 369 IPR000504 GO:0003723
Seca12g06230 497 SUPERFAMILY RNA-binding domain, RBD 182 272 IPR035979 GO:0003676
Seca12g06230 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Seca12g06230 497 FunFam Splicing factor CC1-like 275 380 - -
Seca12g06230 497 Gene3D - 450 497 IPR012677 -
Seca12g06230 497 SUPERFAMILY RNA-binding domain, RBD 290 368 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06230 Seca-Chr12 154190324 154196824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06230 263 364 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 2.51e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06230 K13091 - gmx:100793461 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06230 12 154190324 154196824 Seca4g02029 4 34598001 34607255 ECH
Seca12g06230 12 154190324 154196824 Seca12g06230 12 154190324 154196824 ECH
Seca12g06230 12 154190324 154196824 Seca4g02029 4 34598001 34607255 PCT