Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06228 ATGTCAAAGGTGGCGAGTCCTAATGAAAAGGGAAACGAGGTTGACCATAGTAACTTTGATGAAGAGAGACACAATCCCAAGTTGTCAATGCCAATGATGTTTCCAGGTTTGAATAGGGAGAGGGAGATGTCAGCTATGATCTCTGCTTTGACCCATGTGATCTGTGGAGAGGATCCAAATGGTGATCAGAAAAGGGACTACACTGCATTCGGTGGTGGTGTTTATACTGATGCTTTTCCTGTGACACCAAACATGCCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCAAAACCTTCTTCCACTTCTTCATCTTATGGTGGCAGTTCTGCTCTCAAGAGAAGGAGAGAAGATGATGGATCCCCTGCTTTTCCCACAATTGCAGAATGTTCAAGCAACTGGACCAACACAACAGCAACAACAATAAAAGAAGAAATGAACCAAATGGAAAAACCTGTATATGAATACAGAACAGACATAGTGAGAGAGGGATCACAGAATGAGCAACCGAGGAGAAAATACAGAGGAGTGAGACAGAGACCATGGGGGAAGTGGGCTGCAGAGATCAGAGACCCTTTCAAAGCAACAAGAGTTTGGTTAGGAACATTTGACACAGCTGAGGCAGCAGCAAGAGCCTATGATCAAGCTTCATTGCGTTTCAGAGGCAACAAAGCAAAACTAAACTTCCCTGAAAATGTTAGGCTGAGACAACCTCCTCCCCTGAATCCACCACCGACCCATTTGAGCATTTCAGATTCTCATAGTGCCTTTATGTCAATTTCATCAACGACTGAGCCAATAGTTCACACTGAAGCTCTCCACACTTTGCAGGGTTCAGGCAAATTTTATGACTTTCATCACCCAATGAGTCTATATGATCAGATTACTGTGTCATCATCCACTATGGCTTCTCATATTCAACCATCCCCATCACCATCAGCTTCGCATTCTTCTTCTTCTACGTTTGCTTCTTCAGTGACTTCTCCGCAAACAGCTTCGATTCCTTCGGTTTATTCTACCGAACTGCCAGCATGGTATTCTGTTTATAGCTCCTCTCCCTCTGGTTCTCGCTCTGCCTCATAA 1080 0.4435 MSKVASPNEKGNEVDHSNFDEERHNPKLSMPMMFPGLNREREMSAMISALTHVICGEDPNGDQKRDYTAFGGGVYTDAFPVTPNMPSASASASASAKPSSTSSSYGGSSALKRRREDDGSPAFPTIAECSSNWTNTTATTIKEEMNQMEKPVYEYRTDIVREGSQNEQPRRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFDTAEAAARAYDQASLRFRGNKAKLNFPENVRLRQPPPLNPPPTHLSISDSHSAFMSISSTTEPIVHTEALHTLQGSGKFYDFHHPMSLYDQITVSSSTMASHIQPSPSPSASHSSSSTFASSVTSPQTASIPSVYSTELPAWYSVYSSSPSGSRSAS. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06228 359 SMART rav1_2 172 235 IPR001471 GO:0003700|GO:0006355
Seca12g06228 359 MobiDBLite consensus disorder prediction 85 125 - -
Seca12g06228 359 MobiDBLite consensus disorder prediction 302 332 - -
Seca12g06228 359 Gene3D AP2/ERF domain 171 231 IPR036955 GO:0003700|GO:0006355
Seca12g06228 359 FunFam Ethylene-responsive transcription factor 2 171 230 - -
Seca12g06228 359 MobiDBLite consensus disorder prediction 9 27 - -
Seca12g06228 359 PRINTS Ethylene responsive element binding protein signature 195 211 IPR001471 GO:0003700|GO:0006355
Seca12g06228 359 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Seca12g06228 359 ProSiteProfiles AP2/ERF domain profile. 172 229 IPR001471 GO:0003700|GO:0006355
Seca12g06228 359 PANTHER DNA-BINDING DOMAIN 109 315 IPR044808 GO:0003700|GO:0009873
Seca12g06228 359 SUPERFAMILY DNA-binding domain 172 230 IPR016177 GO:0003677
Seca12g06228 359 MobiDBLite consensus disorder prediction 85 109 - -
Seca12g06228 359 Pfam AP2 domain 172 221 IPR001471 GO:0003700|GO:0006355
Seca12g06228 359 CDD AP2 172 231 IPR001471 GO:0003700|GO:0006355
Seca12g06228 359 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06228 Seca-Chr12 154159700 154161217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06228 33 246 AP2-EREBP Transcription Factor Family AT5G64750 43.119 1.74e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g06228 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06228 - - tpra:123913316 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06228 12 154159700 154161217 Seca12g06228 12 154159700 154161217 ECH
Seca12g06228 12 154159700 154161217 Seca4g02034 4 34680817 34682583 ECH