LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g06222	ATGGGATGCGTCAGTAGCAAGTACACTCCCCCTCGAACCCGAACCCGAAGCAGAGACCGAAACCGCGACGGTGAGAGGTTGAAACGGGACAATGAGTTCGCAAGTAATGGTTCTGCACCCAAACCAATCAACACCCAGCAGAAGGACGTGGGAGTGGAGACTAAGAAGAGAGAAGAGAGTGTGAGTGGACATAAGACTACTTCAGAAGGAGATACTGATCATAGTGTAAAGGGTGTTTCTAGAAACGATGACAAGAGTGGGGTTGGGAATGTTTCCGGTAGGTCTGAGGAGAAGAAGAAGATTGCTAGCAATGAATCAGAGGACGGGTGGCCAAAATGGCTGGTTGATAATATCCCAAAAAATGTTTTGGATAGTTTGGTTCCCAAGAGTGCTGATTGCTATGAAAAACTCGGAAAGGTAGGACGTGGAACATATAGCAATGTGTACAAAGCAAGAGATAAGGACACTGGGAGGATTGTTGCTTTGAAGAAGGTACGCTTTGACACATCAGATTCTGAAAGCATCAAGTTTATGGCAAGAGAGATCATGATACTTCAGACACTGGATCATCCCAATGTCATCAAACTTGAAGGACTAGCAACATCAAGGATGCAGTATAGTCTTTATCTAGTTTTTGATTACATGCAGTCTGACCTTACCAGAATTATCTCTCGCCCTGGGGAGAGACTCACTGAACCACAGATCAAGTGTTTCATGCAACAGCTCCTTTTGGGGCTAAAGCATTGTCATGAGAGGGGAGTTATGCACCGAGATATTAAACCTTCTAACTTGTTAATAGATAAAAGAGGGGTGCTAAAAATTGCAGATTTTGGGCTTGCAAATTCTTCTAAGATTAAACCAGACGGGCCTCTTACAAATCGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAACCAATTATGATGATAACATTGATCTCTGGAGTGCAGGATGCTTGTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCCGGGAGGACAGAGGTAAAATTTTATGTGGACTGTATAAAAATAGATAAAGATTTTAACTTGGTTGAACAGCTTCACATGATCTTCAAACTTTGTGGTTCACCTTCAGATGATTACTGGATGAAAATGAAGCTAATGACAAGTTTCCGTCCACCACAACATTATAAAGCTAGTTATGAAGAAAACTTTCAGGTTTTCCCTTCCTCTGCCCGTGGTCTCTTGACTACACTTCTTAATCTAGACCCTGAATTTCGTGGCAGTTCTGCCTCTGCTCTTGAAAGTGAATTCTTCAAATCTAGTCCATCAGCATGTGACATTTCAGAGTTAGCAGTAATCTACAAATGTGAGGATGAACGCTCACAAACTAAGAGACGCAAAAGGTGCAAACATTTGGACAAAAGGCAAGAATCTAAAACAAGAACAAGCAATGTAAGCCTATCAAGAAAGAACCAAACTGCTATAAGCAGGAGAGATTCAGAACCATCAAAAGAGGAGAAGAGTGTGAAACAAAACATGCAAGATCAAGAAACTGGGAATAGTGGAAGCAGCAAATCATCACTATTTATGAACGAAAGGAGCATGAATGCATCTATATCCCCAGTTTTTGTCTCTAGTGGGAAAAAATCCCCCAAAACTGAGGGACATCCTAATGCTCTTAAGAACATAAAGAACTACACCCTCTTACAGGCCTCTATTATTGATATGATCAATCGCAACGAAGGCAATGAATTTGGTCAGTATCGCAGGTCCTTTTCTATGTTGGATCTTCGACTTGATCCAGACAAGTTATCAAGGTAG	1803	0.4165	MGCVSSKYTPPRTRTRSRDRNRDGERLKRDNEFASNGSAPKPINTQQKDVGVETKKREESVSGHKTTSEGDTDHSVKGVSRNDDKSGVGNVSGRSEEKKKIASNESEDGWPKWLVDNIPKNVLDSLVPKSADCYEKLGKVGRGTYSNVYKARDKDTGRIVALKKVRFDTSDSESIKFMAREIMILQTLDHPNVIKLEGLATSRMQYSLYLVFDYMQSDLTRIISRPGERLTEPQIKCFMQQLLLGLKHCHERGVMHRDIKPSNLLIDKRGVLKIADFGLANSSKIKPDGPLTNRVVTLWYRAPELLLGSTNYDDNIDLWSAGCLLAEMFVGRPIMPGRTEVKFYVDCIKIDKDFNLVEQLHMIFKLCGSPSDDYWMKMKLMTSFRPPQHYKASYEENFQVFPSSARGLLTTLLNLDPEFRGSSASALESEFFKSSPSACDISELAVIYKCEDERSQTKRRKRCKHLDKRQESKTRTSNVSLSRKNQTAISRRDSEPSKEEKSVKQNMQDQETGNSGSSKSSLFMNERSMNASISPVFVSSGKKSPKTEGHPNALKNIKNYTLLQASIIDMINRNEGNEFGQYRRSFSMLDLRLDPDKLSR.	601

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g06222	600	FunFam	Mitogen-activated protein kinase	215	446	-	-
	Seca12g06222	600	MobiDBLite	consensus disorder prediction	50	81	-	-
	Seca12g06222	600	FunFam	probable serine/threonine-protein kinase At1g54610	121	216	-	-
	Seca12g06222	600	SUPERFAMILY	Protein kinase-like (PK-like)	129	436	IPR011009	-
	Seca12g06222	600	MobiDBLite	consensus disorder prediction	1	106	-	-
	Seca12g06222	600	ProSitePatterns	Protein kinases ATP-binding region signature.	140	163	IPR017441	GO:0005524
	Seca12g06222	600	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	254	266	IPR008271	GO:0004672\|GO:0006468
	Seca12g06222	600	SMART	serkin_6	134	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g06222	600	MobiDBLite	consensus disorder prediction	458	522	-	-
	Seca12g06222	600	MobiDBLite	consensus disorder prediction	90	106	-	-
	Seca12g06222	600	PANTHER	CELL DIVISION PROTEIN KINASE	132	436	-	-
	Seca12g06222	600	MobiDBLite	consensus disorder prediction	507	522	-	-
	Seca12g06222	600	Pfam	Protein kinase domain	134	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g06222	600	Gene3D	Phosphorylase Kinase; domain 1	122	216	-	-
	Seca12g06222	600	MobiDBLite	consensus disorder prediction	12	32	-	-
	Seca12g06222	600	ProSiteProfiles	Protein kinase domain profile.	134	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g06222	600	Gene3D	Transferase(Phosphotransferase) domain 1	217	476	-	-
	Seca12g06222	600	MobiDBLite	consensus disorder prediction	488	506	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g06222	Seca-Chr12	154096524	154105392	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g06222	129	483	Core Cell Cycle Gene Families	AT5G10270	42.627	2.53e-91	289

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Seca12g06222		Pkinase	1.8e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g06222	K08819		-	gmx:102667260	778.474