Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06214 ATGTCAACAACTACTACTTCTCAAGCTATTGTATTTGAGGAGCAAAATCAGATGATGCCTATGCAAATGGGTTTCAATATTCATTTCCCAACAAACCTAACCTTTCAAGCTCCTTTGGGTTGCAATAATATTCAATCTTTGAAAGCCTTCAGTTCCATAGCTTCTTCACTTGCATCTGAAGATTCTACATCAAATCTAACAGAAACCCTATTCTCAAACACTGCTGATCATCATCATCAAAAATCAAGAGAATACCTAACTTCTAGCTTTGGTGGAGCTCAATTCCTTTCCTTGCATAGATCAAGTGTAAATCCATGGGCATTGGGAGAAGTAACTGATTGCTTCAGCAGTAAAAGAAGTGGTGATGATCATCATCATCTTGGAATCTCTGCCATGAAGATGAAGAAAATGAAGGCAAGAAGGAAGGTGAGAGAGCCAAGGTTTTGCTTCAAGACCATGAGTGATGTGGATGTGTTGGATGATGGTTACAAGTGGAGGAAGTATGGACAGAAAGTAGTGAAGAACACACAGCACCCCAGAAGCTACTACCGTTGCACACAAGATAATTGTCGTGTTAAGAAACGTGTGGAGCGGTTAGCGGAAGATCCAAGGATGGTGATAACCACATATGAAGGGAGACATGCACACTCTCCATCTAATGATCTTGAAGACTCTCAAACTCCATCTCAATTTACCAATTTCTTATGGTAG 711 0.4023 MSTTTTSQAIVFEEQNQMMPMQMGFNIHFPTNLTFQAPLGCNNIQSLKAFSSIASSLASEDSTSNLTETLFSNTADHHHQKSREYLTSSFGGAQFLSLHRSSVNPWALGEVTDCFSSKRSGDDHHHLGISAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSNDLEDSQTPSQFTNFLW. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06214 236 SUPERFAMILY WRKY DNA-binding domain 151 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g06214 236 FunFam WRKY transcription factor 57 145 219 - -
Seca12g06214 236 ProSiteProfiles WRKY domain profile. 154 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06214 236 Pfam WRKY DNA -binding domain 160 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06214 236 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 220 IPR044810 GO:0003700
Seca12g06214 236 SMART WRKY_cls 159 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06214 236 Gene3D WRKY domain 146 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06214 Seca-Chr12 154014021 154016035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06214 129 236 WRKY Transcription Factor Family AT4G39410 76.991 2.28e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g06214 WRKY 6.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06214 - - pvu:PHAVU_002G266400g 343.969