Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06211 ATGGGTCCCCTTACACTGTCTGTTAGGGTGCAAGACTCTGCCATTTCATTACCCGATGGCTGTACTAAGAGAAAACAAAACTTGCTTCTGAGAAATTCTTTTGCATCAGTTAGCATGGGGGAGGAAAAGCCCTTTGACTTCTTACGCACTTTATTTGAGGGTGTTATTGCAGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATTGACACTATAAAAACACGTCTGCAGGCTGCTCGAGGAGGAGAAAAACTAATATTGAAAGGCCTTTATTCTGGATTGGCAGGGAACCTTGCTGGTGTCTTACCGGCGTCTGCTCTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTAAGGATATTTCCTGAGAATCTGAGTGCTTTTGCTCATTTAACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGGTTCGTGTTCCAACAGAGGTTGTTAAGCAACGAATGCAAACTGGGCAGTATACTTCAGCTTCTGGTGCTGTTCGCTTTATTGCATCTAAGGAAGGCTTTAAAGGATTTTATGCTGGCTATGGATCTTTCTTATTGCGAGATTTGCCTTTTGATGCTATTCAGTTTTGCATCTATGAGCAGATCCGAATAGGTTATAAGCTTGCGGCGCGAAGAGATCTGAATGACCCAGAAAATGCAATTATTGGTGCTTTTGCAGGTGCTCTAACTGGAGCTATAACTACTCCCCTTGATGTCATTAAGACAAGGTTAATGATTCAGGGATCTGCAAACCGTTATAACGGAATCGTAGATTGTGTTCAAACTATTATTAAGGAAGAGGGACCTCGTGCCTTTCTGAAGGGTGTTGGGCCAAGGGTACTATGGATAGGCATAGGTGGTTCAATATTCTTTGGTGTCCTTGAGGGCACAAAACGTTTCCTTGCTGAGAGGCGTCCTACAGTAGCTCAGTACACAAACTCAGAGAAAAGTAAGGATTAA 981 0.4302 MGPLTLSVRVQDSAISLPDGCTKRKQNLLLRNSFASVSMGEEKPFDFLRTLFEGVIAGGTAGVVVETALYPIDTIKTRLQAARGGEKLILKGLYSGLAGNLAGVLPASALFVGVYEPIKQKLLRIFPENLSAFAHLTAGAIGGIAASLVRVPTEVVKQRMQTGQYTSASGAVRFIASKEGFKGFYAGYGSFLLRDLPFDAIQFCIYEQIRIGYKLAARRDLNDPENAIIGAFAGALTGAITTPLDVIKTRLMIQGSANRYNGIVDCVQTIIKEEGPRAFLKGVGPRVLWIGIGGSIFFGVLEGTKRFLAERRPTVAQYTNSEKSKD. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06211 326 Gene3D Mitochondrial carrier domain 48 322 IPR023395 -
Seca12g06211 326 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 31 314 - -
Seca12g06211 326 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 53 320 - -
Seca12g06211 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 130 212 IPR018108 -
Seca12g06211 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 307 IPR018108 -
Seca12g06211 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 49 121 IPR018108 -
Seca12g06211 326 PRINTS Mitochondrial carrier protein signature 54 67 IPR002067 GO:0055085
Seca12g06211 326 PRINTS Mitochondrial carrier protein signature 230 252 IPR002067 GO:0055085
Seca12g06211 326 PRINTS Mitochondrial carrier protein signature 185 203 IPR002067 GO:0055085
Seca12g06211 326 PRINTS Mitochondrial carrier protein signature 67 81 IPR002067 GO:0055085
Seca12g06211 326 Pfam Mitochondrial carrier protein 51 85 IPR018108 -
Seca12g06211 326 Pfam Mitochondrial carrier protein 225 310 IPR018108 -
Seca12g06211 326 Pfam Mitochondrial carrier protein 130 210 IPR018108 -
Seca12g06211 326 SUPERFAMILY Mitochondrial carrier 52 302 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06211 Seca-Chr12 153944169 153951113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06211 128 313 Chloroplast and Mitochondria Gene Families AT1G07030 29.843 6.42e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06211 K15111 - gmx:100811130 582.793