Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06204 ATGGACGATTACTATTTTGTAAACCCTCACCCTGACCCCAATTATGCTCACTCTGCTGCTATGACTCTACCCTCCTCTGAGTTCATACTATCCGATTTTCTCATGCTCGATGATTATGTTGATCATCATCAAGATTCTCAATCACAAAGTACTGAATCATCGGAGAAGGTATCCTTCAGCGATGCCAGTCACGGATTCAATGGAGCAACCTCTAAGAACAATAACATGCAAGTAAAATGCAAAAATGGGATTAGGAAAAATAAGGAAGAGGTGAGGCAGAGGATAGCGTTTAGAACCAGATCAGAGCTTGAGATTATGGATGATGGATACAAATGGAGGAAGTATGGAAAGAAATCCGTGAAGAATAGTCCGAATCTAAGGAACTACTATAAATGTTCAAGTGGAGGATGCAATGTGAAGAAAAGGGTGGAAAGGGATAGAGATGACTCGAGGTATGTGATAACAACTTACGAAGGCGTGCACAATCATGAGAGTCCATTTACTACCTACTCCAGTCAAATCTCCTTCGTACATCCTCATTTTGATGCTTCTTGA 555 0.409 MDDYYFVNPHPDPNYAHSAAMTLPSSEFILSDFLMLDDYVDHHQDSQSQSTESSEKVSFSDASHGFNGATSKNNNMQVKCKNGIRKNKEEVRQRIAFRTRSELEIMDDGYKWRKYGKKSVKNSPNLRNYYKCSSGGCNVKKRVERDRDDSRYVITTYEGVHNHESPFTTYSSQISFVHPHFDAS. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06204 184 SMART WRKY_cls 106 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06204 184 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 47 169 IPR044810 GO:0003700
Seca12g06204 184 Gene3D WRKY domain 91 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g06204 184 MobiDBLite consensus disorder prediction 44 75 - -
Seca12g06204 184 SUPERFAMILY WRKY DNA-binding domain 98 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g06204 184 ProSiteProfiles WRKY domain profile. 101 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06204 184 Pfam WRKY DNA -binding domain 107 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g06204 184 FunFam WRKY transcription factor 57 92 166 - -
Seca12g06204 184 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06204 Seca-Chr12 153877175 153879218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06204 89 180 WRKY Transcription Factor Family AT5G64810 66.304 1.77e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g06204 WRKY 1.4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06204 - - gmx:100500248 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06204 12 153877175 153879218 Seca12g06204 12 153877175 153879218 ECH