Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06200 ATGCTGAACACTACAATGGAGTTGGCTGCAAAGCTCCATCACACGCTCATTCTCGACGCACCCAAACCTTCTCTTCCCCCACTCTCCAATCGCGCCCTTATTATTAACACCAACCGATTCTTCGCCCCCAAAACACCCAATTTCGATGCTTCCGCATGTCGTTTATCCTCAGTTGCATACGACGCCGCCGAAACGACGACAACAGAAAATGAAAACGACGACATCGCTTCTCTGTTCTCCGACACCTCGAACGAACCCAACAGAAAACGCGGGAACAAGCAACCGAACACCGGTGCTTCCGGTGTCTCATCAGGTGTCAAGTTAGAGAACATTAGCAAAAGCTACAAAGGCGTCACCGTTTTGAAAGGCGTTAGCTGGGAAGTGAAGAAGGGTGAGAAAGTGGGTTTGGTTGGCGTAAACGGTGCGGGTAAAACGACCCAATTGAGAATAATTGCGGGTCAGGAAGACCCGGATTCAGGGAACGTGATTAAAGCGAAACCGAATATGAAAGTTGCGTTTTTGAGCCAGGAATTTGAGGTTTCACCGAGTAAAACGGTGAGGGAGGAGTTTCTGAGTGCTTTCAAGGAGGAAATGGAGATAGCAGGGAAGTTGGAGAAGGTGCAGAAGGCTCTGGAAGGTGCTGTGAATGATTTGGAGTTAATGGGGAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGAAGGGCTCAGGATGTGAACTTGGATGAGGTGGATGCAAAGGTTGATAAGTTGATGCCAGAGCTTGGGTTTGCTCCTGAGGATTCTGATAGGTTGGTGGCTTCTTTTAGTGGAGGGTGGCAGATGAGAATGTCCCTTGGAAAAATTCTGCTTCAGGACCCGGATTTGTTACTGTTGGATGAACCCACGAATCACCTTGACCTTGACACCATTGAGTGGCTTGAAGATTATCTTAACAAGCAGGATGTGCCCATGGTTATCATTTCCCATGACAGAGCTTTTCTTGATCAGCTGTGTACTAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGAAATTATTCTCAGTATGTGGTTTCAAAGGCAGCATGGGTTGAAGCACAGTATACTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAGACAAAAGACTTAATTAATAGGCTAGGTGCTGGAGCAAATTCTGGCCGTGCTTCATCTGCTGAAAAGGGTATGTTTGTGACTTGA 1212 0.4678 MLNTTMELAAKLHHTLILDAPKPSLPPLSNRALIINTNRFFAPKTPNFDASACRLSSVAYDAAETTTTENENDDIASLFSDTSNEPNRKRGNKQPNTGASGVSSGVKLENISKSYKGVTVLKGVSWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEDPDSGNVIKAKPNMKVAFLSQEFEVSPSKTVREEFLSAFKEEMEIAGKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQDVNLDEVDAKVDKLMPELGFAPEDSDRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEDYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVVSKAAWVEAQYTAWEKQQKEIEQTKDLINRLGAGANSGRASSAEKGMFVT. 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06200 403 FunFam Putative ABC transporter ATP-binding component 107 391 - -
Seca12g06200 403 Pfam ABC transporter 121 296 IPR003439 GO:0005524
Seca12g06200 403 ProSitePatterns ABC transporters family signature. 268 282 IPR017871 GO:0005524|GO:0016887
Seca12g06200 403 MobiDBLite consensus disorder prediction 66 104 - -
Seca12g06200 403 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 105 393 - -
Seca12g06200 403 SMART AAA_5 130 345 IPR003593 GO:0016887
Seca12g06200 403 Pfam ABC transporter 335 398 IPR032781 -
Seca12g06200 403 CDD ABCF_EF-3 106 336 - -
Seca12g06200 403 Gene3D - 103 388 IPR027417 -
Seca12g06200 403 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 106 364 IPR003439 GO:0005524
Seca12g06200 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 342 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06200 Seca-Chr12 153850359 153856002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06200 78 322 Calmodulin-binding Proteins AT2G36910 24.219 1.56e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06200 - - gmx:100796907 574.704