Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06198 ATGGCGGCGAAGCAGAGCACAAGGAAGGTGAGCAGAAACCCTGAATTGATAAGGGGAATCAGAAAGTACTCGAGGTCCCAGATGTACCACAAGAGAGGCATCTGGGCTATCAAGGCCAAAAACGGCGGCGTTTTACCTCGCCACGATCCCAAACCTAAACCTGAAGCTCCTGCTGAGAAACCACCCAAATTTTACCCTGCTGATGATGTCAAGAAGCCCCTCATCAACAAGCACAAGCCAAAACCCACTAAGCTCAGGGCTAGCATTACTCCCGGAACAGTGCTGATTCTTCTTGCTGGAAGATTTAAGGGAAAGAGGGTAGTGTTTTTGAAACAGCTTCCTTCTGGTTTGCTTCTTGTAACTGGTCCTTTTAAGATTAATGGAGTTCCTTTGAGACGTGTGAATCAATCCTATGTGATTGGCACATCAACCAAAGTGGATGTCCCTGCTGTTAATGTGGATAAATTTGATGACAAGTACTTTGCTAAGGAAGCCCAGGAAAAGAAGAAGAAAGGAGAAGGCGAGTTCTTTGAGGCTGAGAAGGAGGAGAAAAACGTGTTGCCCCAGGGGAAGAAAGATGACCAGAAAACAGTCGACTCTGCATTGGTAAAGGCCATTGAGAGTGTTCCAGACTTGAAGGCTTATCTGGGTGCCAGGCATGTTTTTAGAGAGGCCAATCAAGTCGCTGATTCTCTAGCAAGTTTAGGCCTTCAATTCCCTCATGGAGTGCATCTTCTCCATGATCCTCCTGCTGTTGTTTCTAATCTCCTTTGGCAAAGACCAATTAGGATTTTCTTTCTCCCGCTTCGTGCATTTGTAGTCTGA 825 0.4618 MAAKQSTRKVSRNPELIRGIRKYSRSQMYHKRGIWAIKAKNGGVLPRHDPKPKPEAPAEKPPKFYPADDVKKPLINKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVPAVNVDKFDDKYFAKEAQEKKKKGEGEFFEAEKEEKNVLPQGKKDDQKTVDSALVKAIESVPDLKAYLGARHVFREANQVADSLASLGLQFPHGVHLLHDPPAVVSNLLWQRPIRIFFLPLRAFVV. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06198 274 Pfam Ribosomal protein L6e 126 225 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca12g06198 274 Coils Coil 162 182 - -
Seca12g06198 274 MobiDBLite consensus disorder prediction 40 84 - -
Seca12g06198 274 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Seca12g06198 274 MobiDBLite consensus disorder prediction 44 76 - -
Seca12g06198 274 Pfam Ribosomal protein L6, N-terminal domain 4 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Seca12g06198 274 CDD KOW_RPL6 81 219 IPR041997 -
Seca12g06198 274 PANTHER 60S RIBOSOMAL PROTEIN L6 3 224 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca12g06198 274 Gene3D - 87 171 IPR014722 -
Seca12g06198 274 FunFam 60S ribosomal protein L6 87 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06198 Seca-Chr12 153833689 153836191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06198 1 225 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 78.222 2.66e-112 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06198 K02934 - gmx:100499766 362.073