Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06190 ATGACAGGGAAGAGAAACCAGAGCAGTCCTGTGGGAAGTCCAACATCAGGGAACATCTCAGATAGCTCTTCAAAAGAGCAAGACAGGTTCCTCCCCATAGCAAACGTGAGCCGTATCATGAAAAGGGCACTTCCAGCAAATGCCAAAATCTCAAAGGAAGCAAAGGAAACAGTCCAAGAATGTGTGTCTGAGTTCATAAGCTTCATAACAGGTGAAGCCTCTGACAAGTGCCAGAGAGAAAAGAGGAAGACAATTAATGGTGATGATCTTCTTTGGGCTATGACAACACTTGGGTTTGAGAACTATGTTGGACCCTTGAAGGGTTATCTCAACAATTACAGGGAAACTGAGGGAGAGAAGAGTTCTATGGCTGGTAAACAAGAAGATCACTCTCCAACAGATCAAGCCAATGATGGGGTAGCTGAAATCAACAAATTGGCTCATTCTAAAGATGATTTTCCAAGTTTCAATGGTGCCTTCTATTCTCAAATGACCCCAAAGGGCTTCCAAGAGATTGGAGGAATCACAGGGTATAGAGAAAGTTCCATGAACAGGGCCATTGCTCAAAGTGCAGTCAATAGTGGTACTGATCCTGATGCAAGTGGTAATAGAATGATGCCAGCCAACCTACGTTATAGGGTTGAATGGTAG 651 0.4378 MTGKRNQSSPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKGYLNNYRETEGEKSSMAGKQEDHSPTDQANDGVAEINKLAHSKDDFPSFNGAFYSQMTPKGFQEIGGITGYRESSMNRAIAQSAVNSGTDPDASGNRMMPANLRYRVEW. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06190 216 MobiDBLite consensus disorder prediction 118 137 - -
Seca12g06190 216 Gene3D Histone, subunit A 17 152 IPR009072 GO:0046982
Seca12g06190 216 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Seca12g06190 216 SUPERFAMILY Histone-fold 27 133 IPR009072 GO:0046982
Seca12g06190 216 MobiDBLite consensus disorder prediction 1 27 - -
Seca12g06190 216 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca12g06190 216 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 138 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca12g06190 216 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Seca12g06190 216 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Seca12g06190 216 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Seca12g06190 216 MobiDBLite consensus disorder prediction 119 135 - -
Seca12g06190 216 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06190 Seca-Chr12 153779244 153779894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06190 21 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.404 1.86e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca12g06190 CBFD_NFYB_HMF 1.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06190 K08065 - gmx:100810059 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06190 12 153779244 153779894 Seca12g06190 12 153779244 153779894 ECH