Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06177 ATGAGGGCTCTCTCTGAGCTCTTCTACCATCTTTATGCCAAGACAATAGTCCTATTCACGTACATGCTAATTGAACTTATCCTTATCATTCGGTACCTGAAATCAAATCATACACCTGATCCTATTTCCACCACCCAATACCTCAATTTCATTGAAGAGAAGAACCCCACAACTTGCTACACCAAAAGACTGAAGACAGAGCATGTAGACTGCAGGGTATGCTTATCAGAATTTGAGGAAGGGGAAAAAGTTAGGAACTTGAACTGTGAACACACATTTCACAAGGATTGTTTGGACAAGTGGTTCTTGCAAGAGGAGCAATATTGTGCTACATGCCCACTCTGCAGGAAAAAAGTGTTGCCAGAAGATGTGGTTGCCAACTATCACTTGCTTCAAAATCAGGTAGAAGTAGACTATGATGATGGGAGTGATGACCAGTTTCTGTTTTTGTTATCTGCATTAAGGGGTGGTAGCACTTTGCATAGATATCTATGA 495 0.4101 MRALSELFYHLYAKTIVLFTYMLIELILIIRYLKSNHTPDPISTTQYLNFIEEKNPTTCYTKRLKTEHVDCRVCLSEFEEGEKVRNLNCEHTFHKDCLDKWFLQEEQYCATCPLCRKKVLPEDVVANYHLLQNQVEVDYDDGSDDQFLFLLSALRGGSTLHRYL. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06177 164 Pfam Ring finger domain 70 116 IPR001841 -
Seca12g06177 164 SUPERFAMILY RING/U-box 50 122 - -
Seca12g06177 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 121 IPR013083 -
Seca12g06177 164 PANTHER - 1 159 - -
Seca12g06177 164 SMART ring_2 71 115 IPR001841 -
Seca12g06177 164 ProSiteProfiles Zinc finger RING-type profile. 71 116 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06177 Seca-Chr12 153671475 153671969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06177 70 126 C3H Transcription Factor Family AT1G15100 50.877 5.18e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06177 K16282 - gmx:102669811 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06177 12 153671475 153671969 Seca12g06177 12 153671475 153671969 ECH
Seca12g06177 12 153671475 153671969 Seca6g01967 6 78496936 78497412 PCT