Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06172 ATGAAGATGGGATTGAGAGATCGTAGCACCAGCATGGAAGATCCAGATGGGACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGTTCATCATCTGTGCAAGAAAAAGAGTATTCCTTAAGGCAGTTATTGGAGCTAATAGATATGCGTGAAAATGCTTTTAGTGCTGTCGGATCTCACTCTCAGGCAGTTCCAGTACTGGTTTCCCTTCTCCGCTCAGGTTCACTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGTTCCCTTTGTAAAGAAAATGAACTGAGGTTGAAAGTCTTGCTTGGAGGATGCATTCCTCCATTACTTGGTCTTCTAAGGTCAAGTTCTACTGAAGGTCAAATTGCTGCTGCAAAGACTATTTATGCTGTCTCTCAAGGGGGAGTAAAAGATCACGTTGGTTCAAAAATTTTTTCAACTGAAGGAGTTGTACCAGTGCTCTGGCAGCAGCTGCAAACTGGTCTGAAGACAGGAAATGTAGTTGAAAGTTTATTGACGGGAGCATTAAAAAATCTCTCCAGCAATACTGAGGGATTCTGGAATGCAACAATACGAGCTGGAGGAGTGGACATATTATTGAAGTTATTGGCAATGGGGCAGCCTAGCACTTTGGCTAATGTGTGCTATTTGCTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCAAAAGTGTTGACAGCAGAGGTGACAAAACAACTCCTGAAACTATTAGGCCCGGGTAATGATGACGCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTGCCCAGTGCAAAGAGGCAAGGCGAGAGATAGCCAATTCCAATGGTATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCCCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGCCTTGAATCATGCACATCAGCTACCCAAATTGCTGACACACTAGGAGCTTTAGCCTCAGCTCTTATGATATATGATAACAAGGCAGAATCTACCAGAGCATCTGATCCTTTGGTAGTTGAGCAGACACTACTCAAACAATTTAAACCCCGCTTGCCCTTCCTTGTGCAGGAACGAACAATTGAAGCTCTAGCTAGTTTGTATGGCAATCCTATACTCTCAACTAAGCTTGCAAATTCTGATGCAAAACATTTGCTTGTTGGTTTAATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTACAAAAGCTCTCTTGACACTATGCAACAATGAAGGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTATTGATATCTCTTTTAGGGCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCCCTGCTTTGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCAATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATCTTGGAAACAGGATCTGTGAAAGCAAAGGAAGATTCAGCAACAATCCTTAAGAACCTCTGCAATCATAGTGAAGATATACGTGCTTGTGTGGAAAGTGCCGATGCTGTTCCTGCATTGTTGTGGTTATTGAAGAATGGAAGCACGAATGGGAAGGATATTGCAGCAAAAACATTAAATCATTTAATTCATAAATCTGATACTACAACTATCAGTCAGCTTACGGCATTATTGACTAGTGATCTTCCTGAATCTAAGGTCTATGTTTTGGATGCTTTGAGAAGCATGCTTTCTGTTGCTCCTCTTAATGACATTCTACGTGAAGGTAGTGCTTCCAGTGATGCATTTGATACCATGATAATGTTATTGAGCTCTACCAAGGAAGAAACTCAGGCAAAGTCTGCATCAGCTCTGGCTGGAATTTTTGAAACAAGGAAAGATGTACGTGAAAGTAGCATTGCTGCTAAAACTCTTTGTTCAGCCATGAAACTGCTTAATGTTGAATCTGAAAGTATCCTGATGGAATCCTCACACTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTGCTGTTGCTAGAGATGCATTATCCCCCCTAGTTTCACTAGCTAATTCTTCAGTTTTGGAAGTTGCAGAGATGGCAACATCTGCTGTAGCAAATCTTATTTTGGATAGTGAAATTGCAGAGAAAGCTGTTGCAGAAAAAGTTATCTTGCCTGCTACCAGGGTATTACGTGAAGGCACAGTTTCTGGAAAATCCCATGCTGCAGCAGCAATTGCTCGCCTCTTACATTCTCGGAAAGTTGATTATGCTGTCACTGATTGTGTGAACCGTGCTGGCACTGTTCTTGCATTAGTTTCATTTTTAGATTCTTCTGTTAATGGATCTGTTGCCACATCAGAGGCTATAGAAGCACTTGCTATTCTGTCCAGGTCAGAAGAGACCAGTGAACAAATTAAACCAGCATGTGCAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCGATAGTCCTGTGTATTGTTGATTCACCGCCAATGATGCAAGATAAAACTATTGAGATTTTATCTCGATTATGTAAGGATCAGCCTGTTGTTTTAGGAGACACCGTTGCTTCTTCCTCTGGATGTATATCTTCAATAGCTAAGAGGATAATTAGTTCCACAAATGTAAAGGTCAGAATTGGAGGGGCTGCACTTCTTGTTTGTGCTGCAAAAGCAAATCATCAGAGACTGGTGGAAGATCTCAATTTATCAAACTTGTCTGCTAACCTGATTCGGTCTCTAGTTGATATTCTTATTTCTGCACAGGCTTCTTTGGATAGTCAGGGTGATGACGATAAGGAATTCGTCAGCGTATGCAGGCATATGAAAGAAGAGGCCAACAGTTGTGAATCCAACACTGGCATATCCACTATATGCGGTGCTGACTTAGCTACATGGTTACTATCTATTCTTGCTTGTCATGATGAAAAAAATAAAATTGCAATAATGGAGGCTGGAGCAATTGATGTTCTCACTGACAGGATCTCAAATTGTTCCTCACAATATTCTCAGATAAACCCTGTTTGCTCCATTATGGTGAACATGCAGATTGACGATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTACTGTTGGCAATATTATTTCAAGATAGAGATATCATACGGGCACATCCAACCATGAAATCTGTGTCAGCACTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTTGTCTGTAATGGTAGCAGGGGAACACTTTTATCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTACTTGGCTGTGCTGATACTGATATACAAGATCTTCTGGAATTGTCAGAGGAATTTTCTTTGGTGCGTTATCCCGATCAAGTGGCTCTAGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGTGCCACTTCTAGGAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGGGCACCATTCTTAGCACTCGGGCTTTTGACTCAGCTTGGTAGAGATTGTCCATCAAATATGATTGTAATGGTAGAGTCTGGGGCCTTAGAGGCACTTACAAAGTATCTTTCCCTGAGTCCACAAGATGCGACTGAAGAAGCTGCTACAGATCTGCTAGGAATTCTATTTAGCAGTGCTGAGATACGAAAACATGAGTCAGCATTTGGTGCTGTTACTCAACTTGTAGCTGTCCTACGATTAGGAGGAAGAGGTTCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTATTTTCTGCTGACCACATTAGAAATGCAGAGATTGCTCGACATGCTGTTCAACCTTTGGTGGAGATTCTTAATACTGGTTCTGAAAGGGAGCAGCATGCTGCAATTGCAGCATTGGTTGGGTTACTGAGTGAAAACCCATCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGTAGGATCCTTTCATCAAATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATTAGGTCTACTATGGCTGCTGCTCGCTGTGTTGAACCACTTGTCTCTCTCCTTGCAACTGAGTTTAGTCCTGCTCAGCATTCAGTTGTCCGGGCATTAGATAGGCTTGTAGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGATGCAGTTGTTCCTCTTGTTGGCCTACTGTCTGGTAGGAACTATGTACTTCATGAGGCTGTTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGACCTGCGTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCTTACATGAAGCACCTGATTATTTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTACCATAGCTAAAGGACCATCGGCTGCTAAAGTCGTTGAACCCTTGTTTTCGTTGCTGACAAGACACGAAGTTGGGCCTGATGGACAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTGGAACATCCACAGTGTCGTGCTGACCATTCATTGACTTCTCACCGAGTTATTGAACCACTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAACTTCTTTCACATCTACTTCTAGAAGAACACCTTCAGAAGGATCCGGTGACACAGCAAGTAATTGGCCCTCTTATAAGAATTCTTGGTTCTGGAATACACATATTGCAGCAGAGAGCTGTAAAAGCCCTAGTTAGTATTGCGTTAACATGGCCAAATGAAATTGCCAAAGAGGGTGGTGTTATTGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCCTTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGTCAAGTATTCTGCAATTTAGCTCAGAATTCTACTTGGAAGTGCCTATTGCCGTGTTAGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACGGTTATTGGTGCGTTAAATGCTCTTCTGGTGTTGGAAAGTGATGATGGAACTAGTGCAGAAGCTATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTCTTAGAAGTATTACTGAACAATGTAAAGATCCGAGAAACGAAGGTTACTAAATCAGCCATCTTACCATTATCTCAGTACCTCTTGGACCCACAAACCCAAGCACAGCAGGCAAGGTTATTGGCAACTTTGGCTCTTGGGGATCTGTTCCAGAATGAGGGTCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCGACAGAAGAAATGAAAGTTGTAGCTATATGTGCTTTGCAAAACCTTGTGATGTACAGCCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTATATTGGATCTGATAGGTTCAAGTGAACCAGAAACATCTGTTCAGGCTGCAATGTTTGTTAAACTTCTCTTCTCAAATAATACTATTCAAGAGTATGCTTCTAGCGAAACAGTCAGAGCGATCACTGCCACTATTGAAAAAGATTTATGGGCTACTGGAACCGTGAATGAGGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGATTGAGAGCAACTGAACCAGCGACACTTAGCATTCCCCACCTGGTTACATCCTTAAAGACAGGTTCAGAGGCTTGCCAGGAAGCTGCCTTGGATGCACTTTTTCTGCTTAGACAAGCGTGGTCAGCGTGCCCAGCTGAAGTTTCAAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTCTGCCAGGGACATTGGTGGTGATCATCAAACGTGGTAACAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTACTGCAAGCTTACACTTGGCAACACTCCACCAAGGCTAACCAAGGTATCAACTGGCCCTAATCCAGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAACTTCATATTTCATGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTTGGTAAAGTTACAATCCAGATTGATCGAGTGGTAATGCTTGGAGCAGTAGCTGGAGAGTACACTCTGTTGCCAGCAAGTAAAAGTGGCCCCCCAAGGAATCTAGAAATAGAATTTCAGTGGTCTAAGAAAACAAGTGAAAATGAAACAGTGTAG 6387 0.4268 MKMGLRDRSTSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRLKVLLGGCIPPLLGLLRSSSTEGQIAAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWQQLQTGLKTGNVVESLLTGALKNLSSNTEGFWNATIRAGGVDILLKLLAMGQPSTLANVCYLLASVMMEDASVCSKVLTAEVTKQLLKLLGPGNDDAVRAEAAGALKSLSAQCKEARREIANSNGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCTSATQIADTLGALASALMIYDNKAESTRASDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYGNPILSTKLANSDAKHLLVGLITMAANEVQDELTKALLTLCNNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSVKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSTNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPESKVYVLDALRSMLSVAPLNDILREGSASSDAFDTMIMLLSSTKEETQAKSASALAGIFETRKDVRESSIAAKTLCSAMKLLNVESESILMESSHCLAAIFLSIKENRDVAAVARDALSPLVSLANSSVLEVAEMATSAVANLILDSEIAEKAVAEKVILPATRVLREGTVSGKSHAAAAIARLLHSRKVDYAVTDCVNRAGTVLALVSFLDSSVNGSVATSEAIEALAILSRSEETSEQIKPACAVLAEFPKSISPIVLCIVDSPPMMQDKTIEILSRLCKDQPVVLGDTVASSSGCISSIAKRIISSTNVKVRIGGAALLVCAAKANHQRLVEDLNLSNLSANLIRSLVDILISAQASLDSQGDDDKEFVSVCRHMKEEANSCESNTGISTICGADLATWLLSILACHDEKNKIAIMEAGAIDVLTDRISNCSSQYSQINPVCSIMVNMQIDDKEDSSMWICALLLAILFQDRDIIRAHPTMKSVSALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLGRDCPSNMIVMVESGALEALTKYLSLSPQDATEEAATDLLGILFSSAEIRKHESAFGAVTQLVAVLRLGGRGSRYSAAKALESLFSADHIRNAEIARHAVQPLVEILNTGSEREQHAAIAALVGLLSENPSRALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCCALFGNTRIRSTMAAARCVEPLVSLLATEFSPAQHSVVRALDRLVDDEQLAELVAAHDAVVPLVGLLSGRNYVLHEAVSRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNATIAKGPSAAKVVEPLFSLLTRHEVGPDGQHSALQVLVNILEHPQCRADHSLTSHRVIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQQVIGPLIRILGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSEPETSVQAAMFVKLLFSNNTIQEYASSETVRAITATIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRLTKVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPASKSGPPRNLEIEFQWSKKTSENETV. 2129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06172 2128 Gene3D - 1792 2000 IPR011989 -
Seca12g06172 2128 SUPERFAMILY ARM repeat 25 354 IPR016024 -
Seca12g06172 2128 Gene3D - 1670 1791 IPR011989 -
Seca12g06172 2128 SUPERFAMILY ARM repeat 1551 1999 IPR016024 -
Seca12g06172 2128 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2001 2103 IPR035892 -
Seca12g06172 2128 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 3 2121 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Seca12g06172 2128 FunFam Coatomer beta subunit 1587 2000 - -
Seca12g06172 2128 Pfam C2 domain 2001 2091 IPR000008 -
Seca12g06172 2128 Gene3D - 609 776 IPR011989 -
Seca12g06172 2128 SUPERFAMILY ARM repeat 1073 1538 IPR016024 -
Seca12g06172 2128 Gene3D C2 domain 2002 2122 IPR035892 -
Seca12g06172 2128 SMART arm_5 1452 1492 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 776 818 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 1200 1241 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 1369 1409 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 1537 1578 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 1155 1198 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 692 730 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 1828 1868 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 1410 1450 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 53 94 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 95 135 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 1282 1323 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 227 268 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 484 524 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 270 319 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 1701 1740 IPR000225 GO:0005515
Seca12g06172 2128 SMART arm_5 526 566 IPR000225 GO:0005515
Seca12g06172 2128 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 495 537 IPR000225 GO:0005515
Seca12g06172 2128 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1351 1585 - -
Seca12g06172 2128 Gene3D - 778 1140 IPR011989 -
Seca12g06172 2128 CDD C2 2003 2092 - -
Seca12g06172 2128 SMART C2_3c 2002 2097 IPR000008 -
Seca12g06172 2128 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2001 2121 - -
Seca12g06172 2128 SUPERFAMILY ARM repeat 386 691 IPR016024 -
Seca12g06172 2128 Gene3D - 1148 1366 IPR011989 -
Seca12g06172 2128 ProSiteProfiles C2 domain profile. 1982 2098 IPR000008 -
Seca12g06172 2128 Pfam Armadillo/beta-catenin-like repeat 63 93 IPR000225 GO:0005515
Seca12g06172 2128 Pfam Armadillo/beta-catenin-like repeat 484 523 IPR000225 GO:0005515
Seca12g06172 2128 Gene3D - 370 608 IPR011989 -
Seca12g06172 2128 Gene3D - 11 369 IPR011989 -
Seca12g06172 2128 Gene3D - 1367 1666 IPR011989 -
Seca12g06172 2128 SUPERFAMILY ARM repeat 620 1022 IPR016024 -
Seca12g06172 2128 Coils Coil 256 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06172 Seca-Chr12 153602228 153614004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06172 455 640 U-box Gene Family AT3G46510 32.500 6.70e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06172 - - gmx:100794002 3647.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06172 12 153602228 153614004 Seca12g06172 12 153602228 153614004 ECH
Seca12g06172 12 153602228 153614004 Seca6g01959 6 78074209 78085139 PCT