Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06170 ATGGCACTCTCATGCTCACTCTCTTCAAGCGTAGGCGTTCCTTACCGTGCTCTTTCTTGTGTTTGGAAAGCGAATTTCGAGAGATGTAAAGCGCCTAATAAGATATTATGTTCAGCACATAATGATAAGAATCGATTTGTTGGAATTGGTGTTGGGTTTGTGGCGGCTTGGATGGTGGGTTTAACGGCGTTGAATGCGGATGCAACGAGAATCGAATACTACGCTACCGTGGGAGATCCTCCTTGTGAGCTCAACTACGTTAAGTCTGGTCTCGGTTACTGCGATGTTGCTGAGGGATTCGGTGACGAAGCTCCTCTTGGGGAGCTTATCAATATTCATTATACTGCAAGATTCGCTGATGGAATAGTCTTTGATAGCAGTTATAAACGTGGTAGGCCTCTCACCATGCGCATTGGTGTTGGCAAGGTAATCAGGGGACTGGATCAGGGGATTTTAGGAGGTGAAGGAGTACCTCCAATGCGGATAGGTGGGAAACGCAAGCTGATGATTCCTCCACTGTTAGCATATGGCCCTGAACCTGCGGGGTGCTTCTCAGGTGACTGCAATATACCCGGCAATGCCACTCTTCTGTATGATATTAAGTTTGTTGGTCTTTATTCGGGCAATGCAAAGTGA 636 0.4686 MALSCSLSSSVGVPYRALSCVWKANFERCKAPNKILCSAHNDKNRFVGIGVGFVAAWMVGLTALNADATRIEYYATVGDPPCELNYVKSGLGYCDVAEGFGDEAPLGELINIHYTARFADGIVFDSSYKRGRPLTMRIGVGKVIRGLDQGILGGEGVPPMRIGGKRKLMIPPLLAYGPEPAGCFSGDCNIPGNATLLYDIKFVGLYSGNAK. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06170 211 SUPERFAMILY FKBP-like 86 204 - -
Seca12g06170 211 FunFam Peptidylprolyl isomerase 79 205 - -
Seca12g06170 211 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 104 202 IPR001179 GO:0003755
Seca12g06170 211 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 107 206 IPR001179 GO:0003755
Seca12g06170 211 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 33 211 IPR044183 GO:0009507
Seca12g06170 211 Gene3D - 80 205 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06170 Seca-Chr12 153590558 153593710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06170 83 203 Calmodulin-binding Proteins AT3G25230 36.585 9.83e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06170 K01802 - gmx:100500547 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06170 12 153590558 153593710 Seca12g06170 12 153590558 153593710 ECH