Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06164 ATGGCTGTTAAGACTCCAGGGGTTGTAATAATACGCATCAAGTCTGCATTACTTTGCTTTTCTAATGCCAATTCAGTCAGAGAAAGGATTCTGAAATGGATCACTCAGGAAGAAGCAGAGGGGAACAAGAACAAGGAAGACACTAGTAACATAATTCAGCTCGTAATACTTGACACCTCAAATTTGGTGAGCATTGACACCTCAGGAATTGCTTCTCTAGAAGATCTGCATAAGAGTTTAGTCTCAAGTGGGAAGCAGTTAGCAATTGTCAACCCTCGGTGGCAAGTGATTTACAAGCTAAAGGTGACCAACTTTGTCAAGAAAATTGGAGGACGGGTCTTCTTGACTGTTGGAGAAGCTATTGACTGCAAGCTCGATGTCTAA 384 0.4193 MAVKTPGVVIIRIKSALLCFSNANSVRERILKWITQEEAEGNKNKEDTSNIIQLVILDTSNLVSIDTSGIASLEDLHKSLVSSGKQLAIVNPRWQVIYKLKVTNFVKKIGGRVFLTVGEAIDCKLDV. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06164 127 Pfam STAS domain 2 120 IPR002645 -
Seca12g06164 127 Gene3D STAS domain 1 125 IPR036513 -
Seca12g06164 127 CDD STAS_SulP_like_sulfate_transporter 2 115 - -
Seca12g06164 127 PANTHER SULFATE TRANSPORTER 5 122 IPR001902 GO:0016020|GO:0055085
Seca12g06164 127 ProSiteProfiles STAS domain profile. 1 124 IPR002645 -
Seca12g06164 127 SUPERFAMILY SpoIIaa-like 4 122 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06164 Seca-Chr12 153541357 153542078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06164 1 122 Inorganic Solute Cotransporters AT5G10180 54.918 1.13e-39 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06164 K17469 - gmx:100775538 206.838