Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06149 ATGGCAACAACTATAGATATGTACAACTACAATAGCAACATCACACATGATTTCTTAGATCCGTACAATGAAGAGTTGATGAGAGCACTTGAACCTTTTATGAAAAGTGATTCATCTACCTCTTCTTCTTCTTCTCTCTCAATGGAATCACACCCTTCTTCTTCCTCCATCTCTTATTCTCCACTTTCTCATCCCAACACCAGCTCCATCGGGCTCAACCAACTCACCCCATCACAAATCCTTCAGATTCAAACACAATTCCACATGTGGCAACAACAGCAACAACAAAACATCGCTAACAGCTTACTCACCCCAAAGCCCGTTTCCATGAAGCACGTTGGCACTCCCACCGCGAAACCCACAAAACTCTACCGTGGGGTGAGACAGCGACATTGGGGGAAGTGGGTTGCTGAGATCAGACTCCCAAAAAACCGCACCCGACTCTGGCTTGGCACATTTGATACAGCAGAGGAAGCAGCTTTGGCTTATGACAATGCAGCATTTAAGCTTAGAGGTGAATTTGCACGCCTTAATTTCCCTCATCTTCGGCACCAAGGAGCACATGTTTTCGGTGAGTTTGGTGATTACAAGCCCCTCCCTTCCTCGGTAGATTCCAAGCTCCAAGCCATTTGTGAAAGCTTGGCCATTACTCAAAAACAGAGCAAAAACAGAGAAAACTCTGTTCAAGATGTAAAGCCTGTGGTGGCACAATCCAACAGTGAATTGGTTTGTCCTCTAGAGTTTGAGGATTTTAAGGTGGAGAATCCAATGTTGTCTGATGAATCTTCACATGGTTCATCTTCTCCTGAATCGTGTATTACTTTCTTGGATTTCTCGGATTGTAAGCAGAGGGATGAAGCAGAGAATTTTGGGTTGGAGAAGTACCCTTCTGTGGAGATTGATTGGGCAGCTATATGA 918 0.4455 MATTIDMYNYNSNITHDFLDPYNEELMRALEPFMKSDSSTSSSSSLSMESHPSSSSISYSPLSHPNTSSIGLNQLTPSQILQIQTQFHMWQQQQQQNIANSLLTPKPVSMKHVGTPTAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEFARLNFPHLRHQGAHVFGEFGDYKPLPSSVDSKLQAICESLAITQKQSKNRENSVQDVKPVVAQSNSELVCPLEFEDFKVENPMLSDESSHGSSSPESCITFLDFSDCKQRDEAENFGLEKYPSVEIDWAAI. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06149 305 Gene3D AP2/ERF domain 123 181 IPR036955 GO:0003700|GO:0006355
Seca12g06149 305 MobiDBLite consensus disorder prediction 34 63 - -
Seca12g06149 305 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Seca12g06149 305 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Seca12g06149 305 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Seca12g06149 305 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Seca12g06149 305 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Seca12g06149 305 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Seca12g06149 305 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 305 - -
Seca12g06149 305 CDD AP2 122 182 IPR001471 GO:0003700|GO:0006355
Seca12g06149 305 FunFam Ethylene-responsive transcription factor 2 122 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06149 Seca-Chr12 153405653 153406648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06149 5 305 AP2-EREBP Transcription Factor Family AT4G39780 51.299 4.88e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g06149 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06149 K09286 - gmx:100818839 352.058