Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06127 ATGCCCCACTTGATCAAACAACCCGAACCTTCTGATTTGTTCTTCCCAGGTGGTCTGTTTCTTCACGCTGATACCGTTCCTACGTCATTCATTTCCTTGATCCCTTCTTCCGAGGCTTGCTCCAATCCGGGGTCGGTTTCGTGTTTTTCTTGGGGTCACAGAAGAAGGGTCGGTTGCGAGATTTCGAGGGTGGAAGTAGGGAGAGTTTCAGTGATAGGTGGCGCTGCGTTCTCATCGTTGAGCTTGTCCCTAAACAAAGAATCAGGGGAGCATGAGAAAAAAGTGGAAGCGGGTATTTGTCAAGAGAAGGAGGTGGTTCGGGTTAGTGGATCGGGTGCTATGAACACGACAAAACATCTTTGGGCTGGAGCTGTAGCTGCCATGGTTTCAAGAACTTTTGTTGCACCTCTTGAGAGACTTAAGCTGGAATACATAGTGCGTGGTGAACAGAAGAACCTTTTTGAACTCATCCAGACAATTGCAGCTTCTCAAGGGTTGAAAGGTTTTTGGAAAGGAAATTTTGTAAATATTCTTAGGACGGCACCCTTTAAGGCTGTAAATTTTTATGCCTATGATACATATAGAAATAAACTGGCGAGGATGTTGGGGAATGAAGAGTCCACAAATTTTGAGAGATTTGTTGCGGGTGCTGCTGCAGGGATTACAGCTACCTTGCTCTGCTTGCCCATGGACACTATCAGGACAGTAATGGTAGCACCTGGTGGTGAAGCCTTGGGAGGTGTAATTGGTACCTTCCGCCACATGATCAAAACTGAGGGCATCTTTTCTCTTTACAAGGGTTTAGTACCCTCCATTATCAGCATGGCACCTTCAGGTGCTGTCTTCTATGGTGTCTATGATATTTTGAAGTCAGCATATCTGCATTCACCTGAAGGAATGAAAAGAATCCAACATATGAAAGAAGAGGCTCAAGAGCTGAATGCATTGGAACAACTGGAATTGGGTCCCATTAGAACTTTATTATATGGTGCTATTGCTGGTTGTTGTTCTGAAGCTGCCACATATCCCTTTGAAGTTGTAAGAAGACAGCTTCAAATGCAAGTTCGGGCAACAAGGTTGAATCCACTGGAAACTTGTGTCAAGATTGTTGAACAAGGAGGCGTTCCTGCTCTCTATGCAGGACTGATTCCCAGCTTATTGCAGATATCTAATTGCTATACTGTGATGGACACAGATATTGAGCAGATATTTTTAGAAGCACAACATCGATGGCTACGTCCAGCTGAAATTTGTGAAATTCTCGGGAATTACAAGAAATTTCGAATTTCCCCAGAGCCTGAACATATGCCACCAAGTGGTTCACTTTTCCTATTTGATCGGAAGGTGCTGAGATACTTTAGAAGGGATGGCCATAACTGGAGGAAGAAAAAAGATGGAAAAACGGTGAGGGAAGCTCACGAGAGACTGAAGGCTGGAAGTGTGGATGTGTTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGACGCACTTACTGGCTGCTTGAGGAGGAACTCTCACACATTGTTCTTGTCCATTATCGGGAAGTGAAGGGAACCAAGACAAATTTTAGATTTGCTAAAGAAAATGAAGAGTCTCTTCCTTCTGCTCAACAAACTTACAAAATTATGCCCAACACAGAAATAGATACTTCTTTATCTTCTAGCATGAACAGTGCTCAAGCATCAGAATATGAAGAAGCTGAATCAGCATTTAATAACCATGCAAGTTCTGAATTCTACTCTTTCCTTGAGCTGCAACGCCCTGTTGTTGAAAAGATTAAAGCTCATATCACTGATTCTTACTGTCCTCTGCCACTCAAAGATGATCAAGAAAAGTTCCCTGTCATTCCTGGGGTGAATTATATCCCACTCAGTCAAGCGAATAAAATCAAAGACATTCATAATGTTGGATTGACATATGAACCCTCAAAATTCCTTGGCTTTTCATCGTGGGAATCTACATTAGAAAGTAATGCTGGAAGTCATCATGTCCCTTTTCAGCCTTCACTTCTTGAAACACAACCCAACAATACAGGAATCAATAGCAGTCCCTCTCAAGGAGATGAGATAATGGCACAACATTTTACCATCAGCATTGCTAAACAGCATGGGAATGGAAGTCTCATACAAGCTGAAGGAAGTTGGCAGGCTTCTGGATTTAATTCCAATTGGCCCATAGATGCTGTGTATTCAGGCTCACAATGCGAGGTTAGTTATAACAACTGTGAGCAGGAAGTTAATGGAGTTGATTTTCAAAAATCCATGGAACAGTGCCTTCTACACCCACACAAACTAAACAAGGTTCTTATGCAAAATGGCCCTCAAGAAAAACTTCTAGAAGCAAAAGACAAGCTAAAATCAGATCTAGAGGTCAATAGAAGCCTGGATGGAGTAGAAGACAGTTATCTCACTTTAAAGAAGACTCTGTTAGATGGATGTCCAGCAGAAGAGGGTCTTAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTAGAAGAATCAAATAAGCAATCCACTTCTGGTGCTTATTGGGATGCAGTTGAAAGTGAAAATGGGGTTGGCAGTACAGCTATTCCTTCCCAAGTGCACCTGGACACCTATGTACTGGATCCATCTGTTTCCAATGATCAGCTTTTTAGCATTATTGATTATTCCCCAAGCTGGACATTTGAAGGCTCAGAAGTTAAGGTTCTCATTTCAGGACGATTCTTAAGGACTCTACATGAAGCAGAACACTGTAAATGGTCATGCATGTTTGGCGAGGTAGAAGTGCAAGCAGAGATCATTGGGAATGGTGTTCTTTGTTGTCATACTCCTCCACACAAGGCTGGGAGGGTTCCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAAGTGCGAGAATTTGATTTCCGGGTTAACCATACTCAAGAAGTCAACACTGCAGGTGACAACAGAGGAAGCACGTCTGATACTTTTAAAATACGATTTGGAGAACTGTTGTCCCTGGAGCATGCCTTCCCTCAGTGTTTAGATTCAATTAGTGTGAGTGAGAAATCTCAACTGATAAGTAAAATCAGTTATTTGCTGATGAAGGATGATGATTGGGACAAGTTGCTGAAACTTACTCTAGAGAAAGATTTTTCTGCAGAAATTTTACAGGAGCAGCTGCTTGAAAATCTTCTGAAAGATAAGTTACTGGCATGGCTCCTTCAGAAAATAACTGAAGATGGGAAAGGCCCTAATGTATTAGATGATGGTGGCCAAGGTGTGCTTCATTTTTCAGCTGCTCTTGGCTATGATTGGGCCCTAGAACCCACAATAGTTGCTGGTGTCAACGTGAACTTTCGTGATATAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTGTGGCAGGGAGCGCACAGTTGCTTCCCTCATTTCTCTTGGCGCAGCACCCGGAGCACTGACTGATCCATGCCCTGAACATCCTTCTGGTAGAACACCAGCTGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCGGGATATCTTGCAGAATCTTTCCTAAGTGCACACCTCAAATCTCTTGATTTGAACAGGGATGTAGGAGAAAAATCTGGAGCAGTAGTCCAAAGAGTCCAAGAACAAAACACTGCTCAAGTTAATGATGAGGACCTGTCATATGAACTGTCATTGAAAGATTCACTGGCTGCAGTGTGCAATGCCACCCAAGCTGCTGCTCGTATTCATCAAGTTTTCAGAGTGCAATCATTCCAGAGAAAACAACTGAAGGAATATGGTGATGACAGATTTGGAATGTCTGATGAACATGCTCTTTCACTTGTAACAATGAATGTGAAACCACACAAGTCTGGACTACGCGATGAACCTGTCCATGCTGCTGCAACACGAATCCAGAACAAGTTCCGCGGTTGGAAGGGCAGAAAAGAATTTCTGATGATTCGACAACGAATAGTTAAAATTCAGGCTCATGTGAGAGGACACCAGGTTAGGAAAAACTGTGGGAAGATAATTTGGTCTGTTGGAATATTGGAGAAGGTTATATTGCGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTTAAATCGGAGGCAATTGCTGAAGGAACTATGGAACAAGGTGTATCTTCCACAGAGGATGACTATGATTTCTTAAGAGAAGGCAGGAAGCAAACAGAGAAAAGGTTGGAGAAAGCCCTGGCTAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATATCATAGGCTGTTGAATGTAGTAACTGAGATCCAAGAAAATCAGGTAAAGCATGATAGGTTTTTTAACTATTCAGAAGAAACAAGAGAATTCGATAACCTCATTGATCTTGAAGCATTGTTGGACGAAGATACCTTCATGCCTACTGCCACTTAG 4419 0.4254 MPHLIKQPEPSDLFFPGGLFLHADTVPTSFISLIPSSEACSNPGSVSCFSWGHRRRVGCEISRVEVGRVSVIGGAAFSSLSLSLNKESGEHEKKVEAGICQEKEVVRVSGSGAMNTTKHLWAGAVAAMVSRTFVAPLERLKLEYIVRGEQKNLFELIQTIAASQGLKGFWKGNFVNILRTAPFKAVNFYAYDTYRNKLARMLGNEESTNFERFVAGAAAGITATLLCLPMDTIRTVMVAPGGEALGGVIGTFRHMIKTEGIFSLYKGLVPSIISMAPSGAVFYGVYDILKSAYLHSPEGMKRIQHMKEEAQELNALEQLELGPIRTLLYGAIAGCCSEAATYPFEVVRRQLQMQVRATRLNPLETCVKIVEQGGVPALYAGLIPSLLQISNCYTVMDTDIEQIFLEAQHRWLRPAEICEILGNYKKFRISPEPEHMPPSGSLFLFDRKVLRYFRRDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWLLEEELSHIVLVHYREVKGTKTNFRFAKENEESLPSAQQTYKIMPNTEIDTSLSSSMNSAQASEYEEAESAFNNHASSEFYSFLELQRPVVEKIKAHITDSYCPLPLKDDQEKFPVIPGVNYIPLSQANKIKDIHNVGLTYEPSKFLGFSSWESTLESNAGSHHVPFQPSLLETQPNNTGINSSPSQGDEIMAQHFTISIAKQHGNGSLIQAEGSWQASGFNSNWPIDAVYSGSQCEVSYNNCEQEVNGVDFQKSMEQCLLHPHKLNKVLMQNGPQEKLLEAKDKLKSDLEVNRSLDGVEDSYLTLKKTLLDGCPAEEGLKKLDSFNQWMSKELGDVEESNKQSTSGAYWDAVESENGVGSTAIPSQVHLDTYVLDPSVSNDQLFSIIDYSPSWTFEGSEVKVLISGRFLRTLHEAEHCKWSCMFGEVEVQAEIIGNGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFRVNHTQEVNTAGDNRGSTSDTFKIRFGELLSLEHAFPQCLDSISVSEKSQLISKISYLLMKDDDWDKLLKLTLEKDFSAEILQEQLLENLLKDKLLAWLLQKITEDGKGPNVLDDGGQGVLHFSAALGYDWALEPTIVAGVNVNFRDINGWTALHWAAFCGRERTVASLISLGAAPGALTDPCPEHPSGRTPADLASANGHKGIAGYLAESFLSAHLKSLDLNRDVGEKSGAVVQRVQEQNTAQVNDEDLSYELSLKDSLAAVCNATQAAARIHQVFRVQSFQRKQLKEYGDDRFGMSDEHALSLVTMNVKPHKSGLRDEPVHAAATRIQNKFRGWKGRKEFLMIRQRIVKIQAHVRGHQVRKNCGKIIWSVGILEKVILRWRRKGSGLRGFKSEAIAEGTMEQGVSSTEDDYDFLREGRKQTEKRLEKALARVKSMVQYPEARDQYHRLLNVVTEIQENQVKHDRFFNYSEETREFDNLIDLEALLDEDTFMPTAT. 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06127 1472 SMART CG_1_2 403 521 IPR005559 GO:0003677
Seca12g06127 1472 FunFam Calmodulin-binding transcription activator 2 1296 1344 - -
Seca12g06127 1472 SUPERFAMILY E set domains 890 975 IPR014756 -
Seca12g06127 1472 ProSiteProfiles IQ motif profile. 1320 1344 IPR000048 GO:0005515
Seca12g06127 1472 SUPERFAMILY Mitochondrial carrier 114 395 IPR023395 -
Seca12g06127 1472 Gene3D Immunoglobulins 882 979 IPR013783 -
Seca12g06127 1472 Pfam IPT/TIG domain 890 964 IPR002909 -
Seca12g06127 1472 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 399 1435 - -
Seca12g06127 1472 Pfam CG-1 domain 406 519 IPR005559 GO:0003677
Seca12g06127 1472 ProSiteProfiles IQ motif profile. 1298 1326 IPR000048 GO:0005515
Seca12g06127 1472 Pfam Mitochondrial carrier protein 321 391 IPR018108 -
Seca12g06127 1472 Pfam Mitochondrial carrier protein 207 294 IPR018108 -
Seca12g06127 1472 Pfam Mitochondrial carrier protein 115 199 IPR018108 -
Seca12g06127 1472 Pfam IQ calmodulin-binding motif 1298 1317 IPR000048 GO:0005515
Seca12g06127 1472 Pfam IQ calmodulin-binding motif 1322 1339 IPR000048 GO:0005515
Seca12g06127 1472 ProSiteProfiles Ankyrin repeat profile. 1124 1156 IPR002110 GO:0005515
Seca12g06127 1472 FunFam Mitochondrial substrate carrier family protein 113 399 - -
Seca12g06127 1472 FunFam Calmodulin-binding transcription activator 2 1053 1200 - -
Seca12g06127 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1291 1346 IPR027417 -
Seca12g06127 1472 ProSiteProfiles Ankyrin repeat region circular profile. 1124 1149 - -
Seca12g06127 1472 ProSiteProfiles Solute carrier (Solcar) repeat profile. 114 197 IPR018108 -
Seca12g06127 1472 PRINTS Mitochondrial carrier protein signature 132 146 IPR002067 GO:0055085
Seca12g06127 1472 PRINTS Mitochondrial carrier protein signature 222 240 IPR002067 GO:0055085
Seca12g06127 1472 PRINTS Mitochondrial carrier protein signature 265 283 IPR002067 GO:0055085
Seca12g06127 1472 PRINTS Mitochondrial carrier protein signature 172 192 IPR002067 GO:0055085
Seca12g06127 1472 PRINTS Mitochondrial carrier protein signature 119 132 IPR002067 GO:0055085
Seca12g06127 1472 PRINTS Mitochondrial carrier protein signature 330 352 IPR002067 GO:0055085
Seca12g06127 1472 Coils Coil 1388 1408 - -
Seca12g06127 1472 Gene3D Mitochondrial carrier domain 111 400 IPR023395 -
Seca12g06127 1472 Gene3D - 1051 1207 IPR036770 -
Seca12g06127 1472 ProSiteProfiles Solute carrier (Solcar) repeat profile. 321 406 IPR018108 -
Seca12g06127 1472 SUPERFAMILY Ankyrin repeat 1078 1186 IPR036770 -
Seca12g06127 1472 Gene3D - 1296 1343 - -
Seca12g06127 1472 ProSiteProfiles Solute carrier (Solcar) repeat profile. 207 292 IPR018108 -
Seca12g06127 1472 ProSiteProfiles CG-1 DNA-binding domain profile. 400 526 IPR005559 GO:0003677
Seca12g06127 1472 FunFam Calmodulin-binding transcription activator 2 883 980 - -
Seca12g06127 1472 SMART ANK_2a 1124 1153 IPR002110 GO:0005515
Seca12g06127 1472 SMART ANK_2a 1163 1192 IPR002110 GO:0005515
Seca12g06127 1472 SMART iq_5 1319 1341 IPR000048 GO:0005515
Seca12g06127 1472 SMART iq_5 1296 1318 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06127 Seca-Chr12 153185546 153199776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06127 444 1468 CAMTA Transcription Factor Family AT2G22300 49.530 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Seca12g06127 CG-1 5.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06127 K21596 - gmx:100798875 1698.33