Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06122 ATGGAGTCCCTTCGTGTTCCCCTTCACAACCTCTCCGAACTCAGCACCCGAATGGACTCTCTCCATCGCTTCATATCCGATTCCATCAACACCAACACTCTCCTCACCAAGCAACACATGGACACTGTCTCCAACGAGATCGTCTCCGCCATTCGCCACGTCATCATCAACGCCGCCGCCATCGTAGCCGCCGAAGCACCCCCGGAAACGGTTCCTCCTAAAAAGCCAACGTTTGACTCAAAAGTCGACAGTGTCGGCGACAACAAGGAACACTGTGAAATCGTGGAGTTCGACGCGATGGAGTTGTTGGCTAAACACCTTCACTTCTGCGAGGTTTGCGGGAAAGGCTTCACGCGCGACGCGAACTTGCGTATGCACATGCGCGCGCACGGGGAACAGTATAAGGCCCCAGAAGCGTTAGCAGCGAAGAAGCCGCGTGGAGAAACGCGCTTAACGGCGACGTTGTTTTCTTGCCCTTTCGAGGGTTGCAAGAGGAACAAGCTGCATAGGAAGTTCAGGCCACTGAAGTCGGTGTTTTGTTTAAGGAACCATTTCAAGAGAAGCCATTGCCCGAAAACGTACACGTGCGATCGGTGCCGGAAGAAGAGTTTTGCAGTGCTTTCGGACTTGAAGAGTCACGCGAAGCAGTGCAGGGGAGAGTCCACGTGGAAGTGCTCGTGTGGAACCACGTTTTCCAGGAAAGAGAAGCTGTTTGGTCACGTGGCGCTGTTCGAGGGGCACGTGCCGGCGCTTGAGGTTGGTGAAGACGATAGAGGGGAACCGATGGCGGCGGCTGAAGGGGAAGGTGCGGAGGGACCGTTGAGGAAGGAAAGTGATGATTTGCCTGAAGGGTTCTTTGATGGTTTGGATGAGTTTGGGTTTGGCTCACCTTAA 894 0.5447 MESLRVPLHNLSELSTRMDSLHRFISDSINTNTLLTKQHMDTVSNEIVSAIRHVIINAAAIVAAEAPPETVPPKKPTFDSKVDSVGDNKEHCEIVEFDAMELLAKHLHFCEVCGKGFTRDANLRMHMRAHGEQYKAPEALAAKKPRGETRLTATLFSCPFEGCKRNKLHRKFRPLKSVFCLRNHFKRSHCPKTYTCDRCRKKSFAVLSDLKSHAKQCRGESTWKCSCGTTFSRKEKLFGHVALFEGHVPALEVGEDDRGEPMAAAEGEGAEGPLRKESDDLPEGFFDGLDEFGFGSP. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06122 297 Gene3D Classic Zinc Finger 108 138 - -
Seca12g06122 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Seca12g06122 297 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Seca12g06122 297 SUPERFAMILY beta-beta-alpha zinc fingers 192 241 IPR036236 -
Seca12g06122 297 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 82 257 IPR044300 GO:0010044|GO:0010447
Seca12g06122 297 Gene3D Classic Zinc Finger 192 243 - -
Seca12g06122 297 SMART c2h2final6 194 215 IPR013087 -
Seca12g06122 297 SMART c2h2final6 108 130 IPR013087 -
Seca12g06122 297 SMART c2h2final6 156 189 IPR013087 -
Seca12g06122 297 Pfam Zinc-finger of C2H2 type 109 128 - -
Seca12g06122 297 MobiDBLite consensus disorder prediction 254 282 - -
Seca12g06122 297 SUPERFAMILY beta-beta-alpha zinc fingers 105 130 IPR036236 -
Seca12g06122 297 FunFam B-cell CLL/lymphoma 6, member B 107 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06122 Seca-Chr12 153137749 153138642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06122 93 272 C2H2 Transcription Factor Family AT1G34370 52.973 3.30e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g06122 zf-met 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06122 - - gmx:100798348 358.607