Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g06122 | ATGGAGTCCCTTCGTGTTCCCCTTCACAACCTCTCCGAACTCAGCACCCGAATGGACTCTCTCCATCGCTTCATATCCGATTCCATCAACACCAACACTCTCCTCACCAAGCAACACATGGACACTGTCTCCAACGAGATCGTCTCCGCCATTCGCCACGTCATCATCAACGCCGCCGCCATCGTAGCCGCCGAAGCACCCCCGGAAACGGTTCCTCCTAAAAAGCCAACGTTTGACTCAAAAGTCGACAGTGTCGGCGACAACAAGGAACACTGTGAAATCGTGGAGTTCGACGCGATGGAGTTGTTGGCTAAACACCTTCACTTCTGCGAGGTTTGCGGGAAAGGCTTCACGCGCGACGCGAACTTGCGTATGCACATGCGCGCGCACGGGGAACAGTATAAGGCCCCAGAAGCGTTAGCAGCGAAGAAGCCGCGTGGAGAAACGCGCTTAACGGCGACGTTGTTTTCTTGCCCTTTCGAGGGTTGCAAGAGGAACAAGCTGCATAGGAAGTTCAGGCCACTGAAGTCGGTGTTTTGTTTAAGGAACCATTTCAAGAGAAGCCATTGCCCGAAAACGTACACGTGCGATCGGTGCCGGAAGAAGAGTTTTGCAGTGCTTTCGGACTTGAAGAGTCACGCGAAGCAGTGCAGGGGAGAGTCCACGTGGAAGTGCTCGTGTGGAACCACGTTTTCCAGGAAAGAGAAGCTGTTTGGTCACGTGGCGCTGTTCGAGGGGCACGTGCCGGCGCTTGAGGTTGGTGAAGACGATAGAGGGGAACCGATGGCGGCGGCTGAAGGGGAAGGTGCGGAGGGACCGTTGAGGAAGGAAAGTGATGATTTGCCTGAAGGGTTCTTTGATGGTTTGGATGAGTTTGGGTTTGGCTCACCTTAA | 894 | 0.5447 | MESLRVPLHNLSELSTRMDSLHRFISDSINTNTLLTKQHMDTVSNEIVSAIRHVIINAAAIVAAEAPPETVPPKKPTFDSKVDSVGDNKEHCEIVEFDAMELLAKHLHFCEVCGKGFTRDANLRMHMRAHGEQYKAPEALAAKKPRGETRLTATLFSCPFEGCKRNKLHRKFRPLKSVFCLRNHFKRSHCPKTYTCDRCRKKSFAVLSDLKSHAKQCRGESTWKCSCGTTFSRKEKLFGHVALFEGHVPALEVGEDDRGEPMAAAEGEGAEGPLRKESDDLPEGFFDGLDEFGFGSP. | 298 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g06122 | 297 | Gene3D | Classic Zinc Finger | 108 | 138 | - | - | |
Seca12g06122 | 297 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 108 | 135 | IPR013087 | - | |
Seca12g06122 | 297 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 110 | 130 | IPR013087 | - | |
Seca12g06122 | 297 | SUPERFAMILY | beta-beta-alpha zinc fingers | 192 | 241 | IPR036236 | - | |
Seca12g06122 | 297 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 82 | 257 | IPR044300 | GO:0010044|GO:0010447 | |
Seca12g06122 | 297 | Gene3D | Classic Zinc Finger | 192 | 243 | - | - | |
Seca12g06122 | 297 | SMART | c2h2final6 | 194 | 215 | IPR013087 | - | |
Seca12g06122 | 297 | SMART | c2h2final6 | 108 | 130 | IPR013087 | - | |
Seca12g06122 | 297 | SMART | c2h2final6 | 156 | 189 | IPR013087 | - | |
Seca12g06122 | 297 | Pfam | Zinc-finger of C2H2 type | 109 | 128 | - | - | |
Seca12g06122 | 297 | MobiDBLite | consensus disorder prediction | 254 | 282 | - | - | |
Seca12g06122 | 297 | SUPERFAMILY | beta-beta-alpha zinc fingers | 105 | 130 | IPR036236 | - | |
Seca12g06122 | 297 | FunFam | B-cell CLL/lymphoma 6, member B | 107 | 130 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g06122 | Seca-Chr12 | 153137749 | 153138642 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g06122 | 93 | 272 | C2H2 Transcription Factor Family | AT1G34370 | 52.973 | 3.30e-68 | 212 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca12g06122 | zf-met | 0.0012 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g06122 | - | - | gmx:100798348 | 358.607 |