Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06121 ATGAGATGTGTTCCCTTGTTTTTGACACACATCATTACATTCCACTTTTTTACCTGTGCTCCGTATTGCAGTTTCACTGGAAATAAGTTGATTTGTGGTGTGAATTATCGTCAACCTTGTGCATCTAATAATGCAGATGAAGGCTCATCACATAAACCAAAAATTGGCCTCATAATTGGCATAATTATAGGGTTAGTTGCTATAATTTTTCTTGGTGGTCTGCTGTTCTTATGGTGCAAGGGTAAACACAAGGGCTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGAGAAGTTGATCGGCGAATTGCATTTGGTCAACTAAAAAGATTTGCATGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTAGCTGTGCATAGGAACCTGTTACGGCTGATTGGGTTTTGTACTACCCCAACTGAGCGCCTCTTGGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCGGCTACGAGAACTCAAACCTGGGGAACCTGTTTTGGACTGGCCTACAAGAAAACGAGTGGCTTTGGGAACAGCCCGTGGCCTAGAATATCTTCATGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAGGCAGTTGTTGGTGACTTTGGTTTGGCAAAGTTAGTGGATGTTCGAAAGACTAATGTGACAACTCAAGTTCGCGGGACCATGGGCCACATAGCTCCTGAATATTTGTCAACTGGAAAGTCTTCAGAGAGGACTGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGGGCAATTGACTTTTCACGTTTGGAAGAGGAAGATGATGTGCTATTGCTTGACCATTTAATGGTGATGTCAACTTCAGCATTTTATCAGAGTAAGGATTGGCCCATCTTGAGCGCTCCACCTAGAAAGGATATCCTAAACCCACTCAGGCTAACACATATAGACAGGGTTAAGAAATTAGAACGGGAGAAAAGACTAGATGCTATTGTTGACCGCAACCTAAATAAAAATTACAACATACAAGAGGTAGAAATGATGATACAAGTTGCGTTACTCTGCACACAAGCAACCCCAGAGGACCGTCCACCAATGTCTGTGGTTGTAAGAATGCTAGAAGGAGAAGGGTTAGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCAATCGGAGGCAAGAATACGAGAGATTACACAGAAGATTTGACTGGGGAGAAGATTCGGTTTATAATCAAGATGCCATTGAGTTGTCTGGTGGAAGATAA 1449 0.4203 MRCVPLFLTHIITFHFFTCAPYCSFTGNKLICGVNYRQPCASNNADEGSSHKPKIGLIIGIIIGLVAIIFLGGLLFLWCKGKHKGYKREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHLMVMSTSAFYQSKDWPILSAPPRKDILNPLRLTHIDRVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIQVALLCTQATPEDRPPMSVVVRMLEGEGLAERWEEWQHVEVNRRQEYERLHRRFDWGEDSVYNQDAIELSGGR. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06121 482 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 104 444 - -
Seca12g06121 482 FunFam Somatic embryogenesis receptor-like kinase 1 199 352 - -
Seca12g06121 482 ProSitePatterns Protein kinases ATP-binding region signature. 128 150 IPR017441 GO:0005524
Seca12g06121 482 ProSiteProfiles Protein kinase domain profile. 122 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06121 482 Gene3D Phosphorylase Kinase; domain 1 91 198 - -
Seca12g06121 482 SMART serkin_6 122 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06121 482 SUPERFAMILY Protein kinase-like (PK-like) 102 434 IPR011009 -
Seca12g06121 482 FunFam Somatic embryogenesis receptor kinase 1 91 198 - -
Seca12g06121 482 Pfam Protein kinase domain 123 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06121 482 FunFam Protein NSP-INTERACTING KINASE 2 366 453 - -
Seca12g06121 482 Gene3D Transferase(Phosphotransferase) domain 1 199 453 - -
Seca12g06121 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06121 Seca-Chr12 153125210 153129952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06121 21 482 Receptor kinase-like Gene Family AT5G10290 77.056 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca12g06121 Pkinase 8.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06121 - - gmx:100793416 764.222