Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06106 ATGTTTCTACAGTCATCTGTTCTGCACTCCCAGCCAAAATCAACAGTAGGAACCCCTGCCTATATTGCACCAGAGGTCTTGTCAAGAAGAGAATATGATGGGAAGGTTGCAGATGTATGGTCTTGTGGGGTGACTTTATATGTGATGCTAGTTGGCGCTTATCCTTTTGAAGACCCAGAAGACCCAAGAAACTTCAGAAAAACACTTCAGCGAATTCTTAGTGTCCACTATTCTATTCCAGACTATGTACGTATCAGTAAAGAGTGCAGGCATCTTTTATCTCGAATATTTGTAGCCAACCCAGAGAAGAGAATCACTATACCAGAAATTAAAATGCATCCGTGGTTCCTAAAGAACTTGCCACTAGAATTTATGGACGAGGGTGATGGTGGGTTGCAAAATGATGTCAATGATTCATCTTCTCAGAGCATTGAGGAAATATTGTCCATAATTCAAGAGGCTAGGAAGCCAGGTGAGGGCCCAAAAGTTGGTGAGCAGTTTGTTGGGGGAAGCATGGATCTTGATGATATGGATGCAGATGCTGACATCGATGAGATTGATACAAGCGGTGATTTTGTCTGTGCATTGTGA 591 0.4247 MFLQSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVHYSIPDYVRISKECRHLLSRIFVANPEKRITIPEIKMHPWFLKNLPLEFMDEGDGGLQNDVNDSSSQSIEEILSIIQEARKPGEGPKVGEQFVGGSMDLDDMDADADIDEIDTSGDFVCAL. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06106 196 Pfam Protein kinase domain 10 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06106 196 ProSiteProfiles Protein kinase domain profile. 1 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06106 196 Gene3D Transferase(Phosphotransferase) domain 1 2 122 - -
Seca12g06106 196 PANTHER SERINE/THREONINE KINASE 11 138 - -
Seca12g06106 196 SMART serkin_6 2 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06106 196 SUPERFAMILY Protein kinase-like (PK-like) 11 122 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06106 Seca-Chr12 152992090 152993466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06106 3 124 CBL-interacting serine-threonine protein kinases AT5G25110 44.355 2.33e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca12g06106 Pkinase 6.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06106 K14498 - gmx:100807981 345.895