Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06101 ATGAAGAGACTTGGCAGCTCCGATTCTTTGGGTGCTCTCATGACAATTTGTCCACCAACAGATATAGACGAACAAAGTCCAAGGAACAACCACGTGTATGGTAGGGATTTTCAGTCCATGTTGGAAGGACTTGATGAGGAAGGGTGTGTTGAAGAATCAGGGCATCAATCTGAGAAGAAAAGGAGACTAAGTGTTGATCAAGTCAAGGCTTTGGAGAAGAACTTTGAGGTAGAAAACAAGCTTGAACCAGAAAGGAAGGTGAAGCTTGCTCAAGAGCTTGGCTTGCAACCAAGACAAGTAGCTGTTTGGTTCCAAAACCGTCGAGCTAGATGGAAAACCAAGCAATTAGAAAGAGACTATGGTGTTCTGAAAGCCAATTATGACACACTTAAACTTAACTATGACACCCTCCAACGAGACAATGAATCCTTACTCAAAGAGGTAGAAAATAATTATATTAAGGAATTGAAATCAAGGCTTGAAGAGGAAAACAGTGAAAGTGGTGCTTCAGTGAAGGAAGAGATGATGACAACCCTGCAAGACTCAGAATACAAAATGAACACAGTTTCTGAAACCCCAATTCCTGGATCCGATTCTAAGGATTTAAGTTATGAATGCTTCAACAATAGTTGTGATGGGGTGGGAGGAGAAGGAGGGGTTGGAGTTTCAGCGCTCTTCCCTGTAGACTTCAATAAAGATGGTTCTTCAGATAGTGACTCAAGCGCAATCTTGAATGAAGAGAATATTAACAATAGCCCAAACGCAGCGATTTCTTCATCTGGGGTTCTTCAAAGTCACAACCTTTTGATGTCTCCTGGGTCGTCTTCGCTCAAATTCAATTGCTCCTCATCGTCATCGCCTTCATCGATGAACTGCTTCCAGTTCCAGAAGCAGTACCAAACACACTATGTGAAGATGGAAGAGAACAATTTTCTCAGTGCAGATGAGGCCTGCAATTTCTTCTCAGATGAACAAGCACCGACCCTGCAGTGGTACTGTTCGGAAGAGTGGAGTTAA 1017 0.4267 MKRLGSSDSLGALMTICPPTDIDEQSPRNNHVYGRDFQSMLEGLDEEGCVEESGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDTLKLNYDTLQRDNESLLKEVENNYIKELKSRLEEENSESGASVKEEMMTTLQDSEYKMNTVSETPIPGSDSKDLSYECFNNSCDGVGGEGGVGVSALFPVDFNKDGSSDSDSSAILNEENINNSPNAAISSSGVLQSHNLLMSPGSSSLKFNCSSSSSPSSMNCFQFQKQYQTHYVKMEENNFLSADEACNFFSDEQAPTLQWYCSEEWS. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06101 338 Pfam Homeobox associated leucine zipper 114 149 IPR003106 GO:0006355|GO:0043565
Seca12g06101 338 SUPERFAMILY Homeodomain-like 41 116 IPR009057 -
Seca12g06101 338 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 310 IPR045224 GO:0003700
Seca12g06101 338 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Seca12g06101 338 FunFam Homeobox-leucine zipper protein HAT5 52 116 - -
Seca12g06101 338 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Seca12g06101 338 CDD homeodomain 59 115 IPR001356 GO:0003677
Seca12g06101 338 Gene3D - 31 115 - -
Seca12g06101 338 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Seca12g06101 338 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Seca12g06101 338 SMART HOX_1 57 118 IPR001356 GO:0003677
Seca12g06101 338 Coils Coil 127 166 - -
Seca12g06101 338 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06101 Seca-Chr12 152899475 152901596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06101 1 334 Homeobox Transcription Factor Family AT2G22430 46.418 1.68e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca12g06101 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06101 K09338 - gmx:100796213 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06101 12 152899475 152901596 Seca12g06101 12 152899475 152901596 ECH
Seca12g06101 12 152899475 152901596 Seca6g01869 6 76093772 76095894 PCT