Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06099 ATGGCTTTTCATCATAGAAAACTGTTATTTCAGAATCATCACAACCATGGTAACATTAGCCCAACACCTTCCCCTCATCAATCACCAGTTTCACAGTTGCCATTGCCTTCAACATTACCCATCCCCACCCCTGAAATAAACCGTGTCCATATTCTTCAAATCGCTGTAATCGTCATGGGTTGCATGGTTGGTGTTACCATGTTTCTCTGCACAGTTTCTGTTATCCTAAGAGGCTATTATTACTCAAGGAGGCGTAACCATAACCATAGCAGAAGCAGAAGTAACTCACCAATATTGTTCGATGTAAATGGAGATGGAGATGGAGATGGAGATTCTCGCTTTTCAGATGATGGGATGGAGCGTGTGATTGATCACCCTATATGGTTCATCCGCACAGAGGGACTCCAACAATCAGTTATAGATTCCATCACTGTTTTCAAATACAAAAAAGATGAAGGACTCATAGAAGGAACAGAGTGCTCTGTTTGTCTAGGTGAGTTTCAACAAGACGAGAGTTTGAGATTATTGCCTAAGTGTAACCACGCTTTTCACATCCTTTGCATTGACACGTGGCTCAGATCACATAAAAATTGTCCCTTGTGTCGTGCACTTGTGGTTAATGGTGATGGTGGTGGTTCAGATTTGAGGGTTACAGTTACTGATCAGAGTGATTCAAGCGTTTCTGGTGAGACTCTGAACCAAGAGGGTCAAATTGAGATTTTTGATGATGTGGCAGGGTCTTATCATGTAGAGGAAAGTGAAAGTAGTGTAATGAGGTTTGTTGGAGATGATGATTCTGGTGTATCATCTAGTGACATTTTACCTGATTTTTTGGTAGAGGAAATTCAGCCTGTGAAAAGGTCAATTTCTATGGATTCATCTTCTGCTTCAACGGTATTTCATGATTTAAATTCTGATAGATGGAACTCAGAGAATGACTTAAACTTTGGTGATAAAATGAATTCAAGTAGCAAGGATATGAGTAAGAATGGTAGTGGAAGTTCAACTGTGGGCAAAGTGGCTTCACTTGGACGTGCATTACAGAAGAGGCCTAGATCCTTTTCAAATAACACTAAATTCTTGTCTAAACACAGCAGGAGCCAGAGTTCAAGTCTTCCTTTGTAA 1125 0.4044 MAFHHRKLLFQNHHNHGNISPTPSPHQSPVSQLPLPSTLPIPTPEINRVHILQIAVIVMGCMVGVTMFLCTVSVILRGYYYSRRRNHNHSRSRSNSPILFDVNGDGDGDGDSRFSDDGMERVIDHPIWFIRTEGLQQSVIDSITVFKYKKDEGLIEGTECSVCLGEFQQDESLRLLPKCNHAFHILCIDTWLRSHKNCPLCRALVVNGDGGGSDLRVTVTDQSDSSVSGETLNQEGQIEIFDDVAGSYHVEESESSVMRFVGDDDSGVSSSDILPDFLVEEIQPVKRSISMDSSSASTVFHDLNSDRWNSENDLNFGDKMNSSSKDMSKNGSGSSTVGKVASLGRALQKRPRSFSNNTKFLSKHSRSQSSSLPL. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06099 374 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 52 206 IPR044675 -
Seca12g06099 374 MobiDBLite consensus disorder prediction 349 374 - -
Seca12g06099 374 MobiDBLite consensus disorder prediction 311 341 - -
Seca12g06099 374 MobiDBLite consensus disorder prediction 14 36 - -
Seca12g06099 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 208 IPR013083 -
Seca12g06099 374 MobiDBLite consensus disorder prediction 311 374 - -
Seca12g06099 374 FunFam RING-H2 finger protein ATL54 135 208 - -
Seca12g06099 374 SUPERFAMILY RING/U-box 143 207 - -
Seca12g06099 374 CDD RING-H2_EL5-like 159 202 - -
Seca12g06099 374 Pfam Ring finger domain 159 202 IPR001841 -
Seca12g06099 374 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Seca12g06099 374 SMART ring_2 160 201 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06099 Seca-Chr12 152871818 152872942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06099 65 206 C3H Transcription Factor Family AT1G72220 50.704 7.63e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06099 - - lja:Lj4g3v2731650.1 302.367