Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06098 ATGAAGCTTTCAGAGTTTGTAAGATGCCCAATAAAAGTTCAAAGATGTGCTGGTAGAGTTGTGCAGAAAGAATTAATAGTTCAAGTTGATCACAGGGATGTAGTTCCAGGTGACATTGTGATTTTTGAACCTGGGGACCTCTTTCCTGGAGATGTCAGATTGTTATCTTCAAAACATCTTGTTGTAAGCCAGGCCTCACTAACTGGGGAATCTTGGACCACTGAGAAAACTGCTGATGTTAGGGAAGATCACAACACCCCTTTATTAGATTTAAAGAACATATGCTTTATGGGCACAAACGTGGTATCAGGTGCTGGAACAGGTTTAGTTATTTCAACTGGATCCAATACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGACTTTGAAAAGGGTCTCAAATGGATATTTTATTTGCTTATTTCTGTTATGCTAGTAGTTGTTACAATTGTATTTGTAACAGATTACACTGCATCTCAAAATTTGAGCGTAAGTATTCTCTTTGCAATCTCAGTAGCATCTGCCCTCAATCCTCAGATGCTTCCCCTCATCATTAACACATGCCTTGCAAAAGGAGCACTTGCAATGGCTAAAGACAGATGTATAGTGAAAAGCTTAACAGCTATACGCGAGATGGGATCAATGGATATCCTCTGTATTGACAAAACAGGCACCCTTACAATGAATCATGCAATCTTGGTTAATCATCTTGACTATAGGGGTTTACCCCAAGAAAAAGTTCTACGCTATGCCTTCCTCAATTCTTACTTTAAGACTGATCAGAAGTATCCTCTAGATGATGCAATTCTGGCATATGTATATTCAAATGGATTCAGGTTTCAACCATCCAAGTGGAAAAAGATAGATGAGATTCCTTTTGACTTCATTAGAAGAAGAGTGTCTATCATCATAGAAACAGAAGACAGACACTCTCAGTTCTTTGGCAGGTTCATGGTAACAAAAGGAGCATTGTTGGAAGTCATGAGAGTTTGTTCCTTTATTGAGAATTTTGACAAAGATGAAATTTCCACCTTCTCTTCAGATGACTATCAGAGGATTTTAAATCTGTCAGAAGAATTGAGCAATGAAGGATTAAGGGTTATAGGAGTAGCTATAAAGAAGCTGGAAATGCAGCAAGCATGTGAAACAAGTAATGGAAGCAAGAGGGGTTTGGTGGATTTTGAAAGAGACATGATGTTTCTTGGCCTCATAGCATTTTTTGACCCACCTAAGGACTCAGCAAAGCAAGCACTATGGCGTTTAGCTGAGAAGGGAGTGAAAGCAAAGGTTTTAACAGGTGATTCTCTCAGCTTGGCAACAAGGGTATGCAGGGAAGTTGGCATAAAGACCACTCATGTAATAACAGGACCTGAGCTAGAGCAACTTGACCAAGACAGTTTCCATGAGACTGTTAAAAGAGCCACAGTACTAGCTCGTCTCACCCCAACTCAGAAACTCCGAGTGGTACAATCCTTGCAAACAATAGGAAACCATATTGTTGGATTCTTAGGAGATGGAGTGAATGATTCACTTGCTTTGGATGCTGCACATGTAAGCATTTCAGTGGACTCAGGGGTTGCAATTGCCAAAGACATGGCAGATATTATCTTACTTGAGAAAGATCTCAATGTGCTTGTTGCAGGAGTGGAGCATGGTAGACTCACCTTTGGCAACACAATGAAATATGTAAAGATGTCAGTTATTGCTAACTTGGGAAGTGTCATTTCACTTCTCATAGCATCACTGTGCCTCAAGTATGAGCCTTTGACTTCAAGACAGCTTCTTACTCAGAATTTCATCTACAGTGTGGGACAGATAGCCATCCCTTGGGACAAGATGGATGAAGAGTATGTGAAGACTCCTCATAAGTTATCAGAGAAAGGCTTGCCTATGTTCATATTGTGGAATGGACCAGTGTGCACTCTCTGTGATGGGGCAACACTTATGTTTCTTTGGTTCTATTACAAGGCTTATGATGATGTGGATGAGAAATTTTTCCATACAGCTTGGTTCATTGAGGGTCTTCTCATGCAGACTCTCATTATCCACTTGATCAGGACAGAGAAAATCCCTTTCATACAGGATATTGCTTCTTGGCCTGTGATTTTCTCCACTCTTGTTGTATCTGCAGTTGGGATTGCATTTCCATTCACACCTATTGGAAAGGTCATGGGATTCATACTTCTACCCCTCTCATATTTTGGATTTTTGGCTGTTCTTTTTGTGGGATATTTTATAGTTGGCCAGGTGGTTAAGAGACTTTACATAAAAGTTTATAAGAGATGGCTTTGA 2310 0.4004 MKLSEFVRCPIKVQRCAGRVVQKELIVQVDHRDVVPGDIVIFEPGDLFPGDVRLLSSKHLVVSQASLTGESWTTEKTADVREDHNTPLLDLKNICFMGTNVVSGAGTGLVISTGSNTYMSTMFSKVGKKKPPDDFEKGLKWIFYLLISVMLVVVTIVFVTDYTASQNLSVSILFAISVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTAIREMGSMDILCIDKTGTLTMNHAILVNHLDYRGLPQEKVLRYAFLNSYFKTDQKYPLDDAILAYVYSNGFRFQPSKWKKIDEIPFDFIRRRVSIIIETEDRHSQFFGRFMVTKGALLEVMRVCSFIENFDKDEISTFSSDDYQRILNLSEELSNEGLRVIGVAIKKLEMQQACETSNGSKRGLVDFERDMMFLGLIAFFDPPKDSAKQALWRLAEKGVKAKVLTGDSLSLATRVCREVGIKTTHVITGPELEQLDQDSFHETVKRATVLARLTPTQKLRVVQSLQTIGNHIVGFLGDGVNDSLALDAAHVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIASLCLKYEPLTSRQLLTQNFIYSVGQIAIPWDKMDEEYVKTPHKLSEKGLPMFILWNGPVCTLCDGATLMFLWFYYKAYDDVDEKFFHTAWFIEGLLMQTLIIHLIRTEKIPFIQDIASWPVIFSTLVVSAVGIAFPFTPIGKVMGFILLPLSYFGFLAVLFVGYFIVGQVVKRLYIKVYKRWL. 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06098 769 NCBIfam HAD-IC family P-type ATPase 21 270 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g06098 769 NCBIfam HAD-IC family P-type ATPase 476 588 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g06098 769 SFLD C1.7: P-type atpase like 207 559 - -
Seca12g06098 769 NCBIfam magnesium-translocating P-type ATPase 6 768 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca12g06098 769 ProSitePatterns E1-E2 ATPases phosphorylation site. 227 233 IPR018303 -
Seca12g06098 769 Gene3D - 19 113 - -
Seca12g06098 769 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 218 416 IPR023299 GO:0000166
Seca12g06098 769 Gene3D - 222 546 IPR023214 -
Seca12g06098 769 SUPERFAMILY HAD-like 397 557 IPR036412 -
Seca12g06098 769 Gene3D - 237 413 IPR023299 GO:0000166
Seca12g06098 769 PANTHER CATION TRANSPORTING ATPASE 19 760 - -
Seca12g06098 769 PRINTS Magnesium-transporting ATPase signature 138 154 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca12g06098 769 PRINTS Magnesium-transporting ATPase signature 722 743 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca12g06098 769 PRINTS Magnesium-transporting ATPase signature 259 272 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca12g06098 769 PRINTS Magnesium-transporting ATPase signature 672 693 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca12g06098 769 PRINTS Magnesium-transporting ATPase signature 617 630 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca12g06098 769 PRINTS Magnesium-transporting ATPase signature 567 582 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca12g06098 769 PRINTS Magnesium-transporting ATPase signature 585 596 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca12g06098 769 PRINTS Magnesium-transporting ATPase signature 637 653 IPR006415 GO:0015444|GO:0015693|GO:0016020
Seca12g06098 769 SUPERFAMILY Calcium ATPase, transduction domain A 19 124 IPR008250 -
Seca12g06098 769 SUPERFAMILY Calcium ATPase, transmembrane domain M 126 766 IPR023298 -
Seca12g06098 769 SFLD p-type atpase 207 559 IPR044492 -
Seca12g06098 769 Gene3D - 114 718 - -
Seca12g06098 769 Pfam E1-E2 ATPase 19 204 - -
Seca12g06098 769 Pfam haloacid dehalogenase-like hydrolase 221 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06098 Seca-Chr12 152856839 152862565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06098 33 632 Primary Pumps ATPases(2) AT1G10130 28.220 5.74e-62 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06098 K01531 - gmx:100795153 1338.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06098 12 152856839 152862565 Seca12g06098 12 152856839 152862565 ECH