Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06090 ATGTCGAAACCCTGGGGCAACATCGGAGCCTGGGCCGCAGACTCGGAGCGTGCCGAGGCCGAAGAGCTCGAAGCCGCAGCTGCGGCATCGGCCTCCGAGTCCGCGAACTTCCCCAGCCTCAAGGAAGCCGTTAACGCCAAGCCCAAAAAGAACAAGAAGATGTCACTTTCTGAGTTTGCCAAGAGCAGTTACGGCTCCGGCGGTGGTGGATTCACCGCCGATAACCAGGGCTTGACGCCGGATGAGATGCTCCGCCTTCCCACTGCACCCAAGGAGCGTTCCGCGGATGAAATGCAGTTCAGCCGCTATGGCGGTGGTTTCTCTTCTTACGACAGGTCCGGTCCTCGCTCCCGGGAGCGCGACGGCGGCAACAGTGACGGTTCCTGGGGCGGTGGAAGAAGATCCTATAGCGGATTTGACGATGAACGCAGGGGTCCGAATTCTAGGGTTTCGGAACTCGATCAGCCGTCGAGGGCCGACGAGGTGGACAATTGGGCTTCGGTGAAGAAATCTCTCCCCTCGCTCGATTCTGGCCGGCAGAATCGATTCAGTGGCGGCAGTGGCGGCGGTTTCGGCGGTGCGTCCAGGGCTGATGGGGTGGATAACTGGGCGGTTGGTAAGAAGCCTGTTCCTGCTAGATCTTCCGGCTATCGCGATTCTGGTTTCCGCGATTCTGGCTTTCGTGATTCCGGCTATCGTGATTCCGGCGTCGAGCCCGATCGCTGGTCGAGGGGACCGTCGCGTGAAATGGAGCGACCGAGGTTGGTTTTGGATCCGCCAAGAGGAGGCGATGGTTCTGTGAATGAAGCTCCGGCGAGGACGAATAGGCCTAATCCGTTTGGCGCTGCGAGGCCTAGGGAGCAAGTGCTGGCTGAGAAAGGATTGGATTGGAAAAAGATGGATTCGGAGATTGAAGCCAAGAAGACGAGTAGGCCAACGAGTTCACATTCGAGCAGGCCTTCCAGTGCTCAGTCAAGTCGTTCGGAGGGTCCAGACGCCGTGCCGAAACCAAAACCGAAGGTGAACCCATTTGGGGACGCCAAACCCAGGGAAGTTTTGCTCGTCGAGCGAGGCATGGATTGGCGGAAGATTGATCTTGAATTGGAGCATCGTGGGGTTGACAGGCCTGAGACGATGGAAGAGAAGTTATTAAAAGAGGAAATTGATAATTTGAAAAAGGAACTTGAGAAAGAGTCTACAATGAATTCAAGTAAGGAATCTGCGGATGAGGCTGCTGGAAATCAAACCAGTACACATGCACTGTTACTCCAGAAAGAAAGCGAGCTGGAACTTCTTATCCGTGATTTGGATGACAAAGTTCGATTTGGGCAGAAAGCTGTGGAAAGGCCTGGTTCATCAGCAGGAAAGTCTACTGGTCTTTCTGATAGGCCACCATCTCGATCTGGCTCATTTGAGGATTCTAGAAGTGTGGATTTTACAGACCGGCCCCGATCCCGTGGCACAGGAGATATGTGGATGCCTCCTAATGATGACAGAAGACAGTTTCAAGGTAGCAGGGAAAGGGGATGGTTTTCTAGCAACAGAGACTTGAATAGGTCAAGTTCAAGAGAAAGATGGTGA 1581 0.544 MSKPWGNIGAWAADSERAEAEELEAAAAASASESANFPSLKEAVNAKPKKNKKMSLSEFAKSSYGSGGGGFTADNQGLTPDEMLRLPTAPKERSADEMQFSRYGGGFSSYDRSGPRSRERDGGNSDGSWGGGRRSYSGFDDERRGPNSRVSELDQPSRADEVDNWASVKKSLPSLDSGRQNRFSGGSGGGFGGASRADGVDNWAVGKKPVPARSSGYRDSGFRDSGFRDSGYRDSGVEPDRWSRGPSREMERPRLVLDPPRGGDGSVNEAPARTNRPNPFGAARPREQVLAEKGLDWKKMDSEIEAKKTSRPTSSHSSRPSSAQSSRSEGPDAVPKPKPKVNPFGDAKPREVLLVERGMDWRKIDLELEHRGVDRPETMEEKLLKEEIDNLKKELEKESTMNSSKESADEAAGNQTSTHALLLQKESELELLIRDLDDKVRFGQKAVERPGSSAGKSTGLSDRPPSRSGSFEDSRSVDFTDRPRSRGTGDMWMPPNDDRRQFQGSRERGWFSSNRDLNRSSSRERW. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06090 526 MobiDBLite consensus disorder prediction 57 73 - -
Seca12g06090 526 MobiDBLite consensus disorder prediction 289 312 - -
Seca12g06090 526 MobiDBLite consensus disorder prediction 170 184 - -
Seca12g06090 526 Coils Coil 13 33 - -
Seca12g06090 526 Pfam Plant specific eukaryotic initiation factor 4B 1 509 IPR010433 GO:0003743
Seca12g06090 526 MobiDBLite consensus disorder prediction 222 258 - -
Seca12g06090 526 Coils Coil 381 408 - -
Seca12g06090 526 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 526 IPR010433 GO:0003743
Seca12g06090 526 MobiDBLite consensus disorder prediction 19 351 - -
Seca12g06090 526 MobiDBLite consensus disorder prediction 390 419 - -
Seca12g06090 526 MobiDBLite consensus disorder prediction 444 526 - -
Seca12g06090 526 MobiDBLite consensus disorder prediction 405 419 - -
Seca12g06090 526 MobiDBLite consensus disorder prediction 313 329 - -
Seca12g06090 526 MobiDBLite consensus disorder prediction 390 404 - -
Seca12g06090 526 MobiDBLite consensus disorder prediction 454 473 - -
Seca12g06090 526 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06090 Seca-Chr12 152774953 152781922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06090 1 526 Eukaryotic Initiation Factors Gene Family AT3G26400 53.191 3.45e-149 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06090 - - gmx:100784238 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06090 12 152774953 152781922 Seca12g06090 12 152774953 152781922 ECH