Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06089 ATGGGAGTCTTCACATTCGTTCTCCGCAAGTCCGGCGGCGACTGGACCGCAAAGCAACATTCCGGCGATATCGAGGCCTCCGCCGATTCCACCTTCGACCTCCAACGGAAGCTCGTTCAAGCCGCTCTCGCCGTTGATTCCTCCGGTGGTGTTCAGTCCTCTTTCTCTCTCGTGTCTCCTTCCTCTGCTGTCTTCCAGGTAGTGATTGTGGGTGGTGCTGCAGTAATCGTTGGGGGTGGTGCCGCAGCTGCTCCTGCAGGAGGTGCTGCCTCAGGTGGCGAGGCTGCCCCTGCTGCTGAGAAGAAAGAAGAAAAGGTTGAGGAAGAGGAGGAGGATGATGATTTGGGATTGTCACTCTTTGATTAG 366 0.5656 MGVFTFVLRKSGGDWTAKQHSGDIEASADSTFDLQRKLVQAALAVDSSGGVQSSFSLVSPSSAVFQVVIVGGAAVIVGGGAAAAPAGGAASGGEAAPAAEKKEEKVEEEEEDDDLGLSLFD. 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06089 121 MobiDBLite consensus disorder prediction 105 121 - -
Seca12g06089 121 MobiDBLite consensus disorder prediction 84 121 - -
Seca12g06089 121 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 121 IPR044252 GO:0003735|GO:0005840
Seca12g06089 121 Pfam 60s Acidic ribosomal protein 72 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06089 Seca-Chr12 152761567 152763027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06089 1 68 Cytoplasmic Ribosomal Protein Gene Family AT5G57290 76.471 1.38e-32 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06089 K02942 - gmx:100804776 117.472